Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796663.1:45386053-45387936[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00014 0.016 17.4 1.3 1 23 124 147 124 147 0.94

2 15 0.0024 0.27 13.6 0.4 1 21 163 183 163 184 0.94

3 15 0.41 47 6.5 6.1 1 23 198 222 198 222 0.91

4 15 0.022 2.5 10.6 2.1 1 21 228 248 228 249 0.95

5 15 0.0012 0.14 14.4 0.1 3 23 264 285 262 285 0.92

6 15 0.94 1.1e+02 5.4 1.5 1 23 290 313 290 313 0.96

7 15 0.38 43 6.6 0.1 1 17 331 347 331 349 0.79

8 15 8.3e-05 0.0095 18.1 2.0 1 23 364 386 364 386 0.97

9 15 2.2e-05 0.0026 19.9 0.5 3 23 394 414 393 414 0.96

10 15 1.8e-05 0.0021 20.2 2.5 1 23 420 443 420 443 0.97

11 15 0.00076 0.086 15.1 5.0 1 23 451 473 451 473 0.98

12 15 5.3e-05 0.006 18.8 0.2 1 23 479 501 479 501 0.96

13 15 0.00093 0.11 14.8 2.8 1 23 507 530 507 530 0.95

14 15 0.033 3.8 10.0 5.5 1 23 544 566 544 566 0.96

15 15 1.2e-05 0.0013 20.8 3.1 1 23 572 595 572 595 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00014	0.016	17.4	1.3	1	23	124	147	124	147	0.94
2	15	0.0024	0.27	13.6	0.4	1	21	163	183	163	184	0.94
3	15	0.41	47	6.5	6.1	1	23	198	222	198	222	0.91
4	15	0.022	2.5	10.6	2.1	1	21	228	248	228	249	0.95
5	15	0.0012	0.14	14.4	0.1	3	23	264	285	262	285	0.92
6	15	0.94	1.1e+02	5.4	1.5	1	23	290	313	290	313	0.96
7	15	0.38	43	6.6	0.1	1	17	331	347	331	349	0.79
8	15	8.3e-05	0.0095	18.1	2.0	1	23	364	386	364	386	0.97
9	15	2.2e-05	0.0026	19.9	0.5	3	23	394	414	393	414	0.96
10	15	1.8e-05	0.0021	20.2	2.5	1	23	420	443	420	443	0.97
11	15	0.00076	0.086	15.1	5.0	1	23	451	473	451	473	0.98
12	15	5.3e-05	0.006	18.8	0.2	1	23	479	501	479	501	0.96
13	15	0.00093	0.11	14.8	2.8	1	23	507	530	507	530	0.95
14	15	0.033	3.8	10.0	5.5	1	23	544	566	544	566	0.96
15	15	1.2e-05	0.0013	20.8	3.1	1	23	572	595	572	595	0.97

Sequence Information

Coding Sequence: ATGTGTGCTGGACGGTGTAGTATATGTTTAGAAACGAAAAACGCAACCCAAAAGGTAACAGAGTTAGATGAAAgtaaagttaagttttccgtAAAATTGCAGTATGTTGCTCCGGAAGTGGAATGGTTTGAGGTTTATATGATATGTCAAAACTGTATAGAACAACTCAATAGTGCCTACAAGTTTAAAGCGCAATGCTTAGCTgtcaatttagaaaataaattaaaaattgactcGGTAAATCAATGTGTTAATGAGTGTGACGAGGACATTTTTGGTAATGATAATGAAAACTACGGCAGTGATACAAGTGGCTATAAAATAGAACTACGCGAGAATGAATCGACATCAACTAATACTCAAGAGGAATTTATATGCTATGATTGTGGGGAGAAATGTAAAACAAAAAGTGAGTTAGTTACACATATTGAAAATTCACATTCGCCTTACACTGAACAAAAAAGTGGAATATACAAGGTGAAACGGTTTGAATGTACAAAATGCGGAAGAAAATATGTCCTAAAAACGACACTAAATGAACACTTATTGAACTGTGATGGTATTAGAAGACATGTTAAAACTAAGGCTGAATATCAATGCGATAGGTGCAAAAAGTATTAcacgacaaaaaaaatattaaaagcacACAAAAAGATGTGCAGGCATGAAGCAAAAACCGAATTTCAATGTACATCTtgtaacaaatattatataagCTTAAAGACTTTGAAAGATCATTATAAGCGTGGATGCAAAAAGGACGCAGAGGATAATGTTCAAgtcatattttgtaaaatctgTGATGAGTACTTCAAATCTCCGGTGTTACTAAACCAACATGTACTAGCTGAGCATAAAACATCTGATTACCATTGTGCTATATGCATTAGCAACTTTGATTCTAAAGAAGAGTATGATACACATATGAACACGAAACATGCAGCGAAAAAAGTTGGAAGCCAAACACGAGGCAGAGTATCATCTAGGAAATTCACTTGTGAAATTTGTAATCAAGAATTCACTTTACTAAAGGCAGTTATCGAGCATTGTGTGAATACCCATGCTATGAATGAAAAGACGATAAGACCGTATTCATGTGAAAAATGTGACAATCGATTCCGCTcttctacaaatttaataaaccaCAGATTATATCACGACAGGAATCGTACAAACATATGTAGTTTTTGTGGGAAAAGCTTTATCACTAAGAATGACTTGACCGCCCATGAATACACCCACTTCAACTGGAGGAACTACAAGTGTGACAAGTGTGCAAAGGCATTTAAGACGAACACAAACCTACGGACACACCACTTAATAGTTCACACAGATCCGTCCCTATGGAAGTACGTTTGTCATATATGTAGTAAACGGTTTCCCCAAAAATCCAATCATGACCAACATATACGCAGACATATCGGTGAGAAGAACTTTGTTTGTCCACTTTGCAAGAAACCGTTTGCCAGCAAAAGTGAGATGCAGGAGCATGTCAGTTATCACTCCAACGTTAGGGCCTATAAATGTGACTATTGCGGAAAGGAATATAGAAAGAAACACACTTATGACGTGCACCTAGTCAAAGTTCATGGCGTTGGTAACACCAAAATACCGGTTAGAGAGAAGAAACACGCTTGCCATATTTGCCCGAGTCGCTTTTATGACAGATTAAAACTGGCGAGGCATCTTTGTACCCATTCTGGACTAAAACCGTTCCCATGCTAtgcttgtgacaaaaaattcacGGATAAATCGTATTTGAAACATCATCTAAAGACTGCACATAATATAATTGAAGAAACTAAATACCAATGGGCTAAATAA
Protein Sequence: MCAGRCSICLETKNATQKVTELDESKVKFSVKLQYVAPEVEWFEVYMICQNCIEQLNSAYKFKAQCLAVNLENKLKIDSVNQCVNECDEDIFGNDNENYGSDTSGYKIELRENESTSTNTQEEFICYDCGEKCKTKSELVTHIENSHSPYTEQKSGIYKVKRFECTKCGRKYVLKTTLNEHLLNCDGIRRHVKTKAEYQCDRCKKYYTTKKILKAHKKMCRHEAKTEFQCTSCNKYYISLKTLKDHYKRGCKKDAEDNVQVIFCKICDEYFKSPVLLNQHVLAEHKTSDYHCAICISNFDSKEEYDTHMNTKHAAKKVGSQTRGRVSSRKFTCEICNQEFTLLKAVIEHCVNTHAMNEKTIRPYSCEKCDNRFRSSTNLINHRLYHDRNRTNICSFCGKSFITKNDLTAHEYTHFNWRNYKCDKCAKAFKTNTNLRTHHLIVHTDPSLWKYVCHICSKRFPQKSNHDQHIRRHIGEKNFVCPLCKKPFASKSEMQEHVSYHSNVRAYKCDYCGKEYRKKHTYDVHLVKVHGVGNTKIPVREKKHACHICPSRFYDRLKLARHLCTHSGLKPFPCYACDKKFTDKSYLKHHLKTAHNIIEETKYQWAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00886740;
90% Identity: -
80% Identity: -