Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796659.1:65835713-65837828[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.5e-07 5.2e-05 25.3 2.9 1 23 441 463 441 463 0.99

2 9 5.7e-06 0.00065 21.8 1.8 1 23 469 491 469 491 0.98

3 9 1.5e-06 0.00017 23.7 0.4 2 23 498 519 497 519 0.97

4 9 0.00013 0.015 17.6 2.8 1 23 525 547 525 547 0.98

5 9 0.00085 0.096 15.0 2.1 1 23 553 575 553 575 0.97

6 9 5.4e-06 0.00062 21.9 0.6 1 23 581 603 581 603 0.96

7 9 0.00014 0.016 17.4 2.4 2 23 610 631 609 631 0.98

8 9 5.3e-06 0.00061 21.9 0.9 1 23 634 656 634 656 0.99

9 9 0.00016 0.018 17.3 0.7 2 23 661 682 660 682 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.5e-07	5.2e-05	25.3	2.9	1	23	441	463	441	463	0.99
2	9	5.7e-06	0.00065	21.8	1.8	1	23	469	491	469	491	0.98
3	9	1.5e-06	0.00017	23.7	0.4	2	23	498	519	497	519	0.97
4	9	0.00013	0.015	17.6	2.8	1	23	525	547	525	547	0.98
5	9	0.00085	0.096	15.0	2.1	1	23	553	575	553	575	0.97
6	9	5.4e-06	0.00062	21.9	0.6	1	23	581	603	581	603	0.96
7	9	0.00014	0.016	17.4	2.4	2	23	610	631	609	631	0.98
8	9	5.3e-06	0.00061	21.9	0.9	1	23	634	656	634	656	0.99
9	9	0.00016	0.018	17.3	0.7	2	23	661	682	660	682	0.97

Sequence Information

Coding Sequence: ATGGATATTACGTTAGATTCATGTTGTAGAATATGTTTAGGAAAACAAAACTTGCAAAGTATTTTTGAGGAACACCATGATATAGCTATCagtgaaaaaattgtatattgtgCCTCAGTACAgATATCTCAGGGCGACTGTTTACCGGAAATGATTTGCActcaatgtttattttatttagacatAGCATACGTGTTTAAAACCGTATGTGAGGcaactgataaaaaattaagGGACCTTCAACTGGCTAAGGAAATAGGAGAATTTGATGAAGATGAGTATAATTACAGTCAAGAATGTATTGCTTGTGATGAAGGTGAAAATACTTCTGAAGTGTTAAACATCGCTAccacttcaaatattaaaattgaatcaGGGAACAATCGTATCCAAAATATAGATAATAATACTAAAGTTTTAATAAATGAACCTGTCCGATTAAAATGTTTTACTAGTGACCATAACATAAAGACAGTATTAGATAAAAATCTTGTGAGTGTAAGAAAAGCTGAAGAGAACATTGCAGTGTTATTAGTAAAGGAAGAAACAGAAGAAGGGACTGCTGTGGAACCTGAAAAGAATATGGAACTAGTAGCATCTGAAGTGACTCGAATTGATATTGAAGGaggtaaacaaaatatatttagaaatGACCTTATTGAAGATGAGGTAATACGAAATGTAGATAACTTCCCGAGATCAGGAATAAGTAAACATACTTTAGAAGATGCAGATTATAGTTTGGAAAAAAGCATGCTTAAAGAGAACACAAAAGATAAAGTTGGACGCcacattacaaaaaaaaatactggtaagtttcctcaaaaattacatcaaaataatagtaatacagataggaaaaacatttttgaaggcAAATTAAAAGATAAAGTTATATTAAAAGATGTAAACTTAAGTAATAAAGTTCAAGATGATGGTACACCAAATTTTGAGGACGTTTTAGAGAACGATCTACCAATGGTAGTATTTGAAGAAACTGTAGTTACCAATAACGACACTTTTCCATATTTCACACAAAACATtgttaataagtttaatgaGACTAATGTCCATGCGGAAACTAATGATaacgacaaaataaaaataaacaaatcttGTGAGAAAATTATAAGAAGCAAGagaaatgaaaaaccaaaaataaaaataaagataagtCCTATGACTTTAAGAAAAGGTAATAGGAAGGTAAATGTATTTGATGACAACAGTAAAAGTAGTaacattaaaaagaaaaagaaaatcagAGGATTAAACAAAAATACAGTAAAAGGTATAACGGTTAAGAAAACGAAGGATGGCTTTAAGTGTGATATTTGTAATAAGTCATTCCCTTTCAGAAGCCACTTGATTCGTCACCTGAATATGCATACAGGAATTAAAAGGTATAGTTGTGAGTACtgcaaacaaaaatttattaacaactatAATTTAAGTGTACATATGCTAAAACACACAGGCGAGTTTCCTTTAAAATGTGATTTATGTAATAAAGGATTTCCCAACCCAAGTTTGCTGAAGCGACATATGACTTCTCACACGGGTGAAACGAATTTCCAGTGTCGCTATTGTTCTGTCAAGTTCAGACAATCGAGTAGTTTAAAATTGCATGAGAAAATGCATTTACATAGGCCGTCTTATCACTGTGATATATGTTACAAAGTGTTTTCTTATACAAATTCTTTGGCAGCACataaaaaacttcattttacCGTAAAGCGATTTTCTTGCGACGTTTGTTTAACTACATTTTCGAGAAAGTCTTCCCTGATCAGACATATGGAGGGACATACTAAATCCAAGAAGATTAAGTGCAAATTCTGTGATATAtcatttaatagtaaaaataattattattcccatTTAAAAACTCATTGTAAATATAAATGTGACACATGTGATGAAGGTTTTCGCTATAAGACTAATTTagttattcatattaaaaaacataaggATGGTTTAAAGTGTGAACAGTGTTATAAACCGTTTCAAAACAAAGCGCAATTAGTCAGGCATTTGGAGAAGCATATTAAATAA
Protein Sequence: MDITLDSCCRICLGKQNLQSIFEEHHDIAISEKIVYCASVQISQGDCLPEMICTQCLFYLDIAYVFKTVCEATDKKLRDLQLAKEIGEFDEDEYNYSQECIACDEGENTSEVLNIATTSNIKIESGNNRIQNIDNNTKVLINEPVRLKCFTSDHNIKTVLDKNLVSVRKAEENIAVLLVKEETEEGTAVEPEKNMELVASEVTRIDIEGGKQNIFRNDLIEDEVIRNVDNFPRSGISKHTLEDADYSLEKSMLKENTKDKVGRHITKKNTGKFPQKLHQNNSNTDRKNIFEGKLKDKVILKDVNLSNKVQDDGTPNFEDVLENDLPMVVFEETVVTNNDTFPYFTQNIVNKFNETNVHAETNDNDKIKINKSCEKIIRSKRNEKPKIKIKISPMTLRKGNRKVNVFDDNSKSSNIKKKKKIRGLNKNTVKGITVKKTKDGFKCDICNKSFPFRSHLIRHLNMHTGIKRYSCEYCKQKFINNYNLSVHMLKHTGEFPLKCDLCNKGFPNPSLLKRHMTSHTGETNFQCRYCSVKFRQSSSLKLHEKMHLHRPSYHCDICYKVFSYTNSLAAHKKLHFTVKRFSCDVCLTTFSRKSSLIRHMEGHTKSKKIKCKFCDISFNSKNNYYSHLKTHCKYKCDTCDEGFRYKTNLVIHIKKHKDGLKCEQCYKPFQNKAQLVRHLEKHIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -