Rmor046564.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:2405177-2412269[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.96 1.1e+02 5.4 3.2 1 23 378 400 378 400 0.99
2 22 8.6e-06 0.00098 21.2 2.7 1 23 409 431 409 431 0.99
3 22 0.00024 0.027 16.7 3.0 1 23 440 462 440 462 0.99
4 22 0.016 1.8 11.0 1.7 1 23 471 493 471 493 0.99
5 22 0.00073 0.083 15.2 3.1 1 23 502 524 502 524 0.99
6 22 9.3e-06 0.0011 21.1 0.5 1 23 533 555 533 555 0.98
7 22 0.00076 0.087 15.1 2.1 1 23 564 586 564 586 0.99
8 22 0.0001 0.011 17.9 0.9 1 23 595 617 595 617 0.99
9 22 0.023 2.6 10.5 6.6 1 23 626 648 626 648 0.99
10 22 0.6 68 6.0 4.8 1 23 657 679 657 679 0.97
11 22 0.01 1.2 11.6 2.5 1 23 688 710 688 710 0.99
12 22 0.00057 0.065 15.5 0.9 1 23 719 741 719 741 0.99
13 22 0.031 3.6 10.0 5.1 1 23 750 772 750 772 0.99
14 22 0.41 47 6.5 4.7 1 23 781 803 781 803 0.97
15 22 0.016 1.8 11.0 1.7 1 23 812 834 812 834 0.99
16 22 0.00057 0.065 15.5 0.9 1 23 843 865 843 865 0.99
17 22 1.1e-05 0.0013 20.9 0.6 1 23 874 896 874 896 0.99
18 22 0.0001 0.012 17.8 1.7 1 23 905 927 905 927 0.99
19 22 0.017 2 10.8 3.2 2 23 968 989 967 989 0.97
20 22 0.00011 0.012 17.8 1.1 2 23 999 1020 998 1020 0.98
21 22 2.5 2.8e+02 4.1 0.8 5 23 1033 1051 1032 1051 0.86
22 22 0.98 1.1e+02 5.3 1.8 1 23 1060 1082 1060 1082 0.98

Sequence Information

Coding Sequence
ATGGGAAATTTCGAAAGAGTAATATGCAGGCTTTGCTTGAGGAAATgtgtcgattttgattttgaagcTGTACAAGAGTATACGAAAGATGTGTTGGAAGTACTTTTACTGAAAATAAATCTGGCCATTAGTGAGGAACCCGTCATGTGTACAAGCTGTGCTTCAAGACTGATGGgatgttttgattttaaagcgATGTGTTTTTACACTCAAGATTATATAGTTCCGTTTCTCGATGATAACGTTTCGAAGCTGGATCTTAAAAAAGTCTATATGAGCAAATGTGAAAAAGTCGATATACCTGAGGATTACAGCGTGTGCGGATTTTGCATGGGACTACTCGAGAAGCATACGGCTGTATCCTTGGATAGTGAAGAGGAAGGCTTTAAGTTGCAAAAATTAATAGAGAAATGTCTTCCCGAATTGGATTTAAGCACCATCGAGGAACCAATGATCTGTGCATCCTGTTATGGATCCTTAAAGACTTGTTCCCATTTTGTAACCAGCTGCTTAATTGTAGAAGAAGAGATTATGGAATATCGCAAATTAACTGGTGCAGACGTTATAGAAATCGCAGACGTACGACAGTCGACGTTGATACATGCATCGAGCATAGAAGGAGATGATAATACGATTGACAGTATCAGTacagaagaaaaattttgtgtCGATATGGGCAACGTTGACGAACAAGTTGGACACGAGAATGGCAGTTTTGGCCACATGGAGGAACAAAAGCATGTTGAAATAAAAGCGGGTCAACATGGTTTTGACagaTGTTCAGATGGTGTTATTTCATCACAACCAGTAACTACTAAGTTACGTGGAAAACGAGAATGTTCAGTGTTAAAAAGAGGTCCATTAAGAACTACCAGTAAACACAAACTGgcacacaaaaaatatttaaaaaatcttaaaagacATCGAGAACTTCATGTGAATcctacagaaataaaaacgtACTGCTGTAACTGCTGTTCTTATCGGACAAAATACAGAAAGTATTTTAAAAGACATTCTCTAAAGCACAAGAATCCATCGGGGGTACTAATATACCGGTCTAAGTCCTATTCACGGCAAACAAAGTATCGACGTAGTCTTATCAATAAGAGCACCTCAGAAATAACAATCTACCAGTGTGGTTCTTGTTCATTTCAGACGAAACTTAAAACTGGGATGCAACACCACATGTTAACCCACAAACTCTCCGCAAAAACGACGATGTATCAGTGTGATATTTGTGAGTTTAAAACAAAACGTAAACGAAACCTACAAAGACATATGTTGACACATAAAGACGattcaaaaatagaaatgtATCAGTGTAATTTTTGTGAGTTTAAGACAAAACGTAAATATGGCCTGCAAAGGCATATATTGACCCATAAAGACCAGTCAGAAATAGAAATGTACCAATGTGCGGCTTGTCCATTTAagacaaaacataaaaatagCCTGCAAGGACATATGCTGACCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTGCGGCTTGTCCATTTAAGACAAAACGTAAACATAGCCTGCAAAGACATATGTTGACCCATAAAGATCAGACAGAAATAAAAACGTATCAGTGTGATATTTGTGGGTTTCAAACAAAACGTAAAGAAGGTCTGCAAAGACATATGTTGATCCATAAAGACGATTCAGAAATAGAAATGTATCAGTGTGATTTTTGTGAGTTTAAGACAAAACGTAAATATGGCCTGCAAAGTCATATATTGACCCATAAAGACCAGTCTGAAATAGAAATGTACCAATGTGATATTTGTGAGTTTCAAACAAAACGTAAATATGGTCTGCAAATACATATGTTGACCCATAAAGACCAGTCAGAATTAGAAATGTACCAATGTGATTCTTGcgattttaaaacaaaacataaatgtACCCTCCAAGAACATATGCTGACCCATAAAGATCTCTCGGACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAACAATACCTGCAAAAACATATGTTGATCCATAAAGACCACTCAGAAATAGAATTGTACCAGTGTGCTTCTTGTCCATTTAagacaaaacataaaaatagCCTGCAAGGACATATGCTGACCCATAAAGACCACTCAGAAATAGAAATATACCAGTGTGCGGCTTGTCCATTTAAGACGAAATTTAAAGCAAACCTGCAAAGACATATGTTGACCCATAAAGACCAGTCAGAATTAGAAATGTACCAATGTGATTCTTGcgattttaaaacaaaacataaatgtGCCCTGCAAGGACATATGCTGACCCATAAAGATCTCTCGGACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAACAATACCTGCAAAGACATATGTTGATCCATAAAGACCACTCAGAAATAGAATTGTACCAGTGTGCGGCTTGTCCATTTAagacaaaacataaaaatagCCTGCAAGGACATATGCTGACCCATAAAGATCACTCAGAAATAGAAATGTACCAGTGTGCGGCTTGTCCATTTAAGACGAAATTTAAAGCAAACCTGCAAAGACATATGTTGACCCATAAAGACCACTCAGAAATACAGATGTATCAGTGTGATATTTGTGAGTTGAAGACAAGACAAAAAGCAAACCTGCAAAGCCATATGTTGACCCATAAAGAGaactcagaaataaaaatgtaccaGTGTGATATTTGTGAGTATAAGATGAAACGTAAACAAGACCTGCAAAAACATATGTTGACCCATAGAGACCACTCAGAAGTAAAAATGTATCAGTGTGTTTCTGGTTCATATCAGAcgaaacataaaaattacattcgaAAGCATGTACTAACTCACAACCTCTCCGCAGAAATAACGATGTGCCAGTGTGATATTTGTGAGTTTAAGACAAAACGTAAAGAAATCCTGCAAAGACATATGTTGACACATAAAGATCACTCAGAAATAGAAATGAACCAGTGTAACATTTGTAATTTGAAGACAGAAAGTAAAGAAAGCCTGCAAAGACATATGTTGACCCATAAAGATCTCTCGGAAATAGAAATGCATCAGCGTGATATTTGTGAGTTGAAGACGAAATGTAAAGAAAACCTGCAAAGACATACGTTGACCCATGGAGACCACTCAGAAGTAGAAATGTATCCGTGTGTCTCTTGTTCATATCAGACGAAATATGAAAGTTGCATGCAGGAGCACATACTAACCCACAAACTCCCCACAGAAACAACGGACTAG
Protein Sequence
MGNFERVICRLCLRKCVDFDFEAVQEYTKDVLEVLLLKINLAISEEPVMCTSCASRLMGCFDFKAMCFYTQDYIVPFLDDNVSKLDLKKVYMSKCEKVDIPEDYSVCGFCMGLLEKHTAVSLDSEEEGFKLQKLIEKCLPELDLSTIEEPMICASCYGSLKTCSHFVTSCLIVEEEIMEYRKLTGADVIEIADVRQSTLIHASSIEGDDNTIDSISTEEKFCVDMGNVDEQVGHENGSFGHMEEQKHVEIKAGQHGFDRCSDGVISSQPVTTKLRGKRECSVLKRGPLRTTSKHKLAHKKYLKNLKRHRELHVNPTEIKTYCCNCCSYRTKYRKYFKRHSLKHKNPSGVLIYRSKSYSRQTKYRRSLINKSTSEITIYQCGSCSFQTKLKTGMQHHMLTHKLSAKTTMYQCDICEFKTKRKRNLQRHMLTHKDDSKIEMYQCNFCEFKTKRKYGLQRHILTHKDQSEIEMYQCAACPFKTKHKNSLQGHMLTHKDHSEIEMYQCAACPFKTKRKHSLQRHMLTHKDQTEIKTYQCDICGFQTKRKEGLQRHMLIHKDDSEIEMYQCDFCEFKTKRKYGLQSHILTHKDQSEIEMYQCDICEFQTKRKYGLQIHMLTHKDQSELEMYQCDSCDFKTKHKCTLQEHMLTHKDLSDIEMFHCDICGFKAKCKQYLQKHMLIHKDHSEIELYQCASCPFKTKHKNSLQGHMLTHKDHSEIEIYQCAACPFKTKFKANLQRHMLTHKDQSELEMYQCDSCDFKTKHKCALQGHMLTHKDLSDIEMFHCDICGFKAKCKQYLQRHMLIHKDHSEIELYQCAACPFKTKHKNSLQGHMLTHKDHSEIEMYQCAACPFKTKFKANLQRHMLTHKDHSEIQMYQCDICELKTRQKANLQSHMLTHKENSEIKMYQCDICEYKMKRKQDLQKHMLTHRDHSEVKMYQCVSGSYQTKHKNYIRKHVLTHNLSAEITMCQCDICEFKTKRKEILQRHMLTHKDHSEIEMNQCNICNLKTESKESLQRHMLTHKDLSEIEMHQRDICELKTKCKENLQRHTLTHGDHSEVEMYPCVSCSYQTKYESCMQEHILTHKLPTETTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-