Rmor009238.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:102842900-102847161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.3 9.5e+02 2.4 0.2 2 16 59 73 58 80 0.83 2 17 0.023 2.6 10.5 2.1 1 20 115 134 115 137 0.83 3 17 2.1e-05 0.0024 20.0 4.4 1 23 143 166 143 166 0.98 4 17 0.00064 0.073 15.4 4.0 1 23 178 200 178 201 0.95 5 17 0.87 99 5.5 3.9 3 23 214 234 213 234 0.98 6 17 0.00017 0.019 17.2 6.8 1 23 240 262 240 262 0.97 7 17 0.00012 0.014 17.6 0.4 1 23 268 290 268 290 0.98 8 17 1.1e-05 0.0013 20.9 0.1 1 21 296 316 296 317 0.96 9 17 5.5 6.2e+02 3.0 1.5 2 23 374 395 373 395 0.88 10 17 0.016 1.8 11.0 1.8 1 23 401 423 401 423 0.98 11 17 0.0061 0.69 12.3 4.2 1 23 429 451 429 451 0.90 12 17 5.7e-06 0.00065 21.8 2.8 1 23 457 480 457 480 0.97 13 17 0.067 7.6 9.0 4.3 3 23 494 514 492 515 0.93 14 17 8.6e-05 0.0098 18.1 2.6 3 23 526 546 525 546 0.99 15 17 2.1e-05 0.0024 20.0 2.2 1 23 552 574 552 574 0.98 16 17 6.4e-06 0.00073 21.7 0.7 1 23 580 602 580 602 0.98 17 17 2.9e-05 0.0033 19.6 0.6 1 22 608 629 608 629 0.95
Sequence Information
- Coding Sequence
- ATGCGGCAaTATGAAGATTCTACATGGGAACCTAAAAGCAGTAGAAGAAGGCCTCAAAAAAAGAATAATCGTACCGTACATTTAAAGTCGACCAGGAAACCCCGTGCTACCAGAAGAAATCTGGATAGACCAAAAAAGCTAGATTTTGATCCAGTGAAACTAGAAGAGGCCTTAAATTGTAGTATTTGCAGTAATTCGTACAAAACCAATATAGAGTTTGCCTTCCATTCAATTGCACATagtaaagataaaaaatattcttgcCATTTTTGTGAATACAGAACAACTTGCAAATACCGTACAGAAGCTCATGTAAGAAACCATGAAGGTACTTCAAGAAAATACAAATGTGAAATATGCACGAAGACATTTAGGAAAAGCATTTATGCACTTGAACATAAGTATTTCCATACAGGAGAAAGGCCTTTCCAGTGTGAAATTTGCGGAAAACATTTCATGTACTCGAAAAGTTTAGCACATCACCGCCGTACAATACATTATGAAATCGTAACAGGGGAACCATTACAAAAATACGATTGCACAATCTGCAACAAACACTACGAATCTCAATCTGGATTACTCAGACATAATTCCACGCATCACAGAGATCCTACCTCTGGAGGTGGATTATCAGTGCTATGTGATATATGCGGAAAAAGACTGTcttgcaaatataaattaaaattccacTTGAGAACTCACACTGGGTATAAACCGTTCTGTTGCCATTTTTGTTCAAAAACTTTTACAAATAAAGACCAACTGTTATCGCACGAACGTGTGCACACTGGCGAAAAACCGTTTTCCTGTGAGTTTTGTGGGAAGGCATTTGCCCAATCTGCCCCTTATAGATACCATGTAAAAACTCATACGGGAGAGCGGAAATACGTCTGTCCGCTTTGTAATAAAGGATTTATCTCTAAGAGTAATATGAGGATACATATAAAGAGCTGTAACATAATCGTAAAAGGTGAGTGTGAaaaCTCATGGTCACCTGTtaagaattatatatttatgaaaattaagCAAACTAAGAAATCTCAAGTACGAAAATCTAGACGAAAAAACTGTAAATCTATGAAAAATATAGTGGAACCACTTAAGCTAGAAGAACCGATAAAGTGCAACTTTTGTAACTCTTCATACAATAATAACGTAGACTATGCATTTCACTCTAAAAAGCACAATGAAGATGGATTATATTCTTGTCATCTATGTGATTACAAGAACGCATCAAAAAGTCTTTTTGAATCGCATATCAGAGCTCATGAAGGTATAAAAAAGTACAAATGTGAGATTTGCAGCAAATCGTTTAAGCAAAACACACATGCTTTAGAACATAAGTTTTTTCATAATGGAGAGAAGCCCTTCCAATGCGAAATTTGTGGAAAACATTTTACTTACTCTAGAAGCCTAGCCACCCATCGCCGAAATTTACACTACGAAATTGTAACAGGAAAACCTCTGGTGAAATGGGACTGTAACCTATGCAATAAACACTATGGGAGTCACTCCGGTCTAGCCAGACACAATTCTATGCATCACAAGGAGCTAGGAGTTGGCTGGTCAGTTCTGTGCGATATTTGCGGAAAGAGTATTTCATCTaaacacaaattaaaatatcatcttAGAACACATACGGGAGATAAACCGTATTCGTGTTCTGTATGTTCTAGAAAATTTTCGAAGAAAGAGCAACTAAAGACTCACGAGCGAATTCACACTGGTGAGAAACCATTTGTTTGCTCTTATTGTGGAAAAACATTCGCTCAAAGAGCCCCTTTCACATATCACATTAAAATGCATACAGGCGAACGATCTCATATCTGTTCAATTTGTGGAAAAGGTTTTATATCGCACAGTAACatgaaaattcatataaaaacgTGTAACATTATAAAAGAGGAATGCGGTTAG
- Protein Sequence
- MRQYEDSTWEPKSSRRRPQKKNNRTVHLKSTRKPRATRRNLDRPKKLDFDPVKLEEALNCSICSNSYKTNIEFAFHSIAHSKDKKYSCHFCEYRTTCKYRTEAHVRNHEGTSRKYKCEICTKTFRKSIYALEHKYFHTGERPFQCEICGKHFMYSKSLAHHRRTIHYEIVTGEPLQKYDCTICNKHYESQSGLLRHNSTHHRDPTSGGGLSVLCDICGKRLSCKYKLKFHLRTHTGYKPFCCHFCSKTFTNKDQLLSHERVHTGEKPFSCEFCGKAFAQSAPYRYHVKTHTGERKYVCPLCNKGFISKSNMRIHIKSCNIIVKGECENSWSPVKNYIFMKIKQTKKSQVRKSRRKNCKSMKNIVEPLKLEEPIKCNFCNSSYNNNVDYAFHSKKHNEDGLYSCHLCDYKNASKSLFESHIRAHEGIKKYKCEICSKSFKQNTHALEHKFFHNGEKPFQCEICGKHFTYSRSLATHRRNLHYEIVTGKPLVKWDCNLCNKHYGSHSGLARHNSMHHKELGVGWSVLCDICGKSISSKHKLKYHLRTHTGDKPYSCSVCSRKFSKKEQLKTHERIHTGEKPFVCSYCGKTFAQRAPFTYHIKMHTGERSHICSICGKGFISHSNMKIHIKTCNIIKEECG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -