Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796662.1:4744086-4746581[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.38 44 6.6 1.8 3 21 8 27 6 28 0.86

2 14 3.6 4.1e+02 3.6 0.1 1 12 137 148 137 151 0.89

3 14 0.14 16 8.0 5.2 1 21 287 307 287 308 0.95

4 14 0.0024 0.27 13.6 2.7 1 23 316 338 316 338 0.99

5 14 0.0003 0.034 16.4 2.0 1 23 356 378 356 378 0.99

6 14 0.057 6.4 9.2 0.4 1 23 409 430 409 430 0.92

7 14 3.8e-05 0.0043 19.2 0.8 1 23 436 458 436 458 0.96

8 14 0.00013 0.014 17.6 0.2 1 20 464 483 464 485 0.95

9 14 3.6e-05 0.0041 19.3 2.3 1 23 492 514 492 514 0.98

10 14 9.8e-06 0.0011 21.1 3.3 1 23 520 542 520 542 0.98

11 14 0.00022 0.025 16.8 6.6 1 23 548 570 548 570 0.99

12 14 3e-06 0.00034 22.7 0.4 1 23 576 598 576 598 0.98

13 14 7.9e-05 0.009 18.2 0.1 1 23 602 624 602 624 0.97

14 14 0.00037 0.042 16.1 0.1 1 23 632 655 632 655 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.38	44	6.6	1.8	3	21	8	27	6	28	0.86
2	14	3.6	4.1e+02	3.6	0.1	1	12	137	148	137	151	0.89
3	14	0.14	16	8.0	5.2	1	21	287	307	287	308	0.95
4	14	0.0024	0.27	13.6	2.7	1	23	316	338	316	338	0.99
5	14	0.0003	0.034	16.4	2.0	1	23	356	378	356	378	0.99
6	14	0.057	6.4	9.2	0.4	1	23	409	430	409	430	0.92
7	14	3.8e-05	0.0043	19.2	0.8	1	23	436	458	436	458	0.96
8	14	0.00013	0.014	17.6	0.2	1	20	464	483	464	485	0.95
9	14	3.6e-05	0.0041	19.3	2.3	1	23	492	514	492	514	0.98
10	14	9.8e-06	0.0011	21.1	3.3	1	23	520	542	520	542	0.98
11	14	0.00022	0.025	16.8	6.6	1	23	548	570	548	570	0.99
12	14	3e-06	0.00034	22.7	0.4	1	23	576	598	576	598	0.98
13	14	7.9e-05	0.009	18.2	0.1	1	23	602	624	602	624	0.97
14	14	0.00037	0.042	16.1	0.1	1	23	632	655	632	655	0.96

Sequence Information

Coding Sequence: ATGGGGACGTTATCTTTAAGCTGCCCCTTTTGCTGTGATGAGAAGTTTTCATCTCacaattcattaaaatatcatATTCTCAGTATAATAGACAATCTATTGTGTCCAGCTTGCGACAAGCGATTAGATAGTATATTAGATTTAGCCGAACACTTGGGTAGGGAAtgtaaagaaaaagaaatcaaACCACCACCTTTAACGCCAATAATACAATCAGTTAATATTAAAGAAGAGACAAATCAAGATTTTATGGAATCTGAGGATGGCAACTCCCAACTAGTTTTACTTAATCCTAAAGTTGAAGGCGAAGATGCTCCCGATGAAAATAACAGTATTTTGGCAAAAGCATTGTTGTCGAAATCTACAACCGAATCTGCCCAAAGTGAGTCGGAAGAGACAGGAGCATTGTATATGTGTCAGATGtgtaatatgaattttaattcgATCGAAGAACATTTGGAGAAGTATCATGAGGGAGAAGAcgttatttatGAAACCGAAGAAACAGAAAATACGCACAGTGAAGAACAGAATTCTGAAGCTGCAGAAGAAGAGGAGGGAGGTACCGACATAGAGGAAAACATGTTTATGCTGCATGAAGATGAAGAATCAGAAAACGGAGACGTGGATGACGGAAAGACTAACCAGACAATAGAAGAGCAGCAATGCTTGGACAAGGATGGCCGAGTTTACACCAGAAAAGTGGTAAAAATCGACAAGTTCTGGATCaataaaaaacagaaacaaGATAATAACGGCCCTATGACTGAGAAATACTTGCTTGAAGATGGAAAAATCTGTAAAATCACCGAAGAAGAGGCCAACTTGATAGACGACAAGGACTCCATAATACAAATCCACCAGTGTCCAAAATGCTTCCTACAGTTCCCCAATTTGAACCactataaaaaacatttatgcGATCCTtcaaaagtgaaaaataaattcaaatgcAGCCACTGCACGGCAGTTTTCCTGAACTACCAGTCATTAACTGCTCACATGAAGTCGCACATAACGAAGGATGCCTCAGGAAAAATAAAGAGAGTCGTCACTTTAGGCCCTTACACTTGCGACGTTTGCAAGACTATGTTTCCGTCTTTTAAAAGTTTACGTCTACACAAAAGAATGCACGATCCTATCAAAGACAAAGTCCCAGAGGCACCCGTAAATTACAGCATCACAGGCCCCATAGATGAAAGCAGGGAAATTGTGCGCCAAATGTTTATTTGTAGCATATGCAATAAGACTTACGACAAGGAATATGAGGAGATACACATAAGGTCGCATAATCAGGAGGAAAATTATGACTGTTCCGTGTGCAACCGTAAATTTTACACTAAAGAAAACCTAGAAATGCACGTAAAGGCACATAGCAATGGCAAGAAGTTTGTTTGTTCTTACTGCAAGAAGCCTTTCACGACTTATGATGCCTTGCAAGATCACGTTGCCAATCAGTGCCAGAAACGACAGTACGAGTGCCAGTACTGTGGCAGACGTTTCTCTAGACCTCACGAGAAAGTTAAACATGAAAGAATCCACACGGGTGAAAAACCACATGTTTGCCAAATCTGCGGTAAAGCATTCCGCGTTAGCTACTGCTTAACGCTTCATTTGCGGACACACTCGGGCACCAGGCCCTATCAATGTACCACCTGCGGAAAACGGTTTAAGTCGCATAGCGTCTACAATCACCACTTGCTTACTCATTCAGATGTCAGAGCTTACAAATGCCCGTATTGTCCCAAAGCATTTAAGACGAGTGTGCAGCTCGCCGGTCATAAAAACAGTCATATTAAACCTTTCGCTTGCACCGAATGCAACAGACCTTTTGCTTCTTTATATGCTGTAAGGGCACACATGGAAACTCATAAGCGAGAAAACAACTTGAAGTTCGACTGTTGGTTGTGTGGGGCGACATACGCTAGAGCCTTCGCCCTTAGGGACCATATGAAGAGCCAGCACGCTGGGGAGAATATGAATGTGGAAGACAATGTACTGATCGAATTAGAAACGAACGAGAGTACTAATCAGATTGAAAACGAAATGAACATCGGTATAGACGAGCAGATGGAGACGAAGGAGGCGgtttaa
Protein Sequence: MGTLSLSCPFCCDEKFSSHNSLKYHILSIIDNLLCPACDKRLDSILDLAEHLGRECKEKEIKPPPLTPIIQSVNIKEETNQDFMESEDGNSQLVLLNPKVEGEDAPDENNSILAKALLSKSTTESAQSESEETGALYMCQMCNMNFNSIEEHLEKYHEGEDVIYETEETENTHSEEQNSEAAEEEEGGTDIEENMFMLHEDEESENGDVDDGKTNQTIEEQQCLDKDGRVYTRKVVKIDKFWINKKQKQDNNGPMTEKYLLEDGKICKITEEEANLIDDKDSIIQIHQCPKCFLQFPNLNHYKKHLCDPSKVKNKFKCSHCTAVFLNYQSLTAHMKSHITKDASGKIKRVVTLGPYTCDVCKTMFPSFKSLRLHKRMHDPIKDKVPEAPVNYSITGPIDESREIVRQMFICSICNKTYDKEYEEIHIRSHNQEENYDCSVCNRKFYTKENLEMHVKAHSNGKKFVCSYCKKPFTTYDALQDHVANQCQKRQYECQYCGRRFSRPHEKVKHERIHTGEKPHVCQICGKAFRVSYCLTLHLRTHSGTRPYQCTTCGKRFKSHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFACTECNRPFASLYAVRAHMETHKRENNLKFDCWLCGATYARAFALRDHMKSQHAGENMNVEDNVLIELETNESTNQIENEMNIGIDEQMETKEAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296732;
90% Identity: -
80% Identity: -