Rmor046447.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:1763888-1769120[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 6.5e-05 0.0073 18.5 3.0 1 23 361 383 361 383 0.99
2 24 0.042 4.8 9.6 5.4 1 23 392 414 392 414 0.98
3 24 0.00035 0.04 16.2 2.1 1 23 423 445 423 445 0.99
4 24 0.0098 1.1 11.6 2.8 1 23 454 476 454 476 0.99
5 24 0.028 3.2 10.2 6.2 1 23 485 507 485 507 0.99
6 24 0.0089 1 11.8 2.9 1 23 512 534 512 534 0.98
7 24 0.0031 0.35 13.2 0.2 2 23 544 565 543 565 0.97
8 24 0.019 2.2 10.7 1.8 1 23 574 596 574 596 0.97
9 24 0.00087 0.099 14.9 2.3 1 23 605 627 605 627 0.99
10 24 0.038 4.4 9.8 8.8 1 23 636 658 636 658 0.99
11 24 0.00062 0.07 15.4 3.9 1 23 667 689 667 689 0.99
12 24 0.0029 0.33 13.3 2.4 1 23 733 755 733 755 0.99
13 24 0.0019 0.21 13.9 3.3 1 23 764 786 764 786 0.98
14 24 0.0049 0.56 12.6 3.0 1 23 954 976 954 976 0.98
15 24 0.011 1.3 11.4 3.8 1 23 979 1001 979 1001 0.99
16 24 0.023 2.6 10.5 0.6 1 23 1010 1032 1010 1032 0.98
17 24 0.0019 0.22 13.8 1.8 1 23 1041 1063 1041 1063 0.98
18 24 0.00052 0.059 15.6 2.7 1 23 1072 1094 1072 1094 0.98
19 24 0.00029 0.033 16.4 2.1 1 23 1103 1125 1103 1125 0.99
20 24 0.22 25 7.4 4.4 1 23 1134 1156 1134 1156 0.98
21 24 0.031 3.5 10.1 4.6 1 23 1165 1187 1165 1187 0.97
22 24 0.016 1.8 11.0 0.8 1 23 1196 1218 1196 1218 0.97
23 24 0.12 14 8.2 4.7 1 23 1227 1249 1227 1249 0.97
24 24 0.0018 0.2 14.0 0.4 1 23 1258 1280 1258 1280 0.98

Sequence Information

Coding Sequence
ATGGGAAATTTAGAACGAGTATGTAGACTTTGCTTTGAAATTTCTTGTAACAATGTTGAAACTAAAGAGGGAATTACGAACGAAGTCTTTAACGTTCTTCTACCGAAAATTaatCTGGCCATAAACGATGATACGGAGATATGTTCACATTGTGCAGAAACTATCAAGAAATGCTTTAGTTTTAAATCGACGTGCCTTGCCACGCAGGAATGTATCCAACCGTTTTATGACGGCAATGACGATAGAAAAGTCGACCTGAAAAATCTAATATATGTAGGCGGAAACAAAGATGAAAGTACCATTGGTGTTACTGAGAATTATGAGATATGTGGACTCTGCATGGGCCTAATAAAAGATTGCTCGTTTATACCCTTGGGTTATGAAAATGAAGACGAAACCTTGGAGAAGATTATGCTGGAGAAATGCCTTCCAGAATCGgATTTAAGCGTAATCAATAACCCTGTAATCTGCACTCCGTGCCATGGATCGCTGCACGATTATTTCAGTTTCGTAACGACCCTAGAAGAAAATATGAAGAGTCGCTGCCAAGTTGTAGATGTAAACACTGAAGCTCCCATACAAGTTGATGATTTCGTACAGTTTACCGCCCAGAATATGCTGGAGAGTAAAGAAAACgagcacaatttaattaaaatagaaataaatgttGTCGAGGAatatagtaacgaaaatatatCACAGATTGCGGAGGAACAGAAGTTGGacgtaattaaaataaaagaagagATTTGCGGCGAAGCACAGAATAGTGATGAGGAATTCGATTGTGATGCGAAATATTTAACGACAGTGGAGGATGGGGAACTTGGCAGCTTTACCCAGGTCACAAGTAACTCATCGACTTGTAAGGAGGTTGAATTTAAAGAGGATAAGCCTATGGAAATGGTTGGTAATGAAGATATCGAAATAAAACCAGATCCAGTAGAGTTTGacagTTTTCAAGAACTCTTCCTTGAATACAAAATGGCCGATGACCCTTTAGATACATCGACGAACGAGACGAGCCCTATGAAGCAGCGCATGTCAAAACTTAAAAGTTCTTCAGAGGTTCTTTGGACTTTCAAATGTGAAATATGTTCTTACGAGACAAAACGCGAAAGTCACCTTCAGCGACACTTACTGACGCATAATAGTCCCGCGTATGTAAGCATGTTTGAATGTGAAATGTGCTCATTTACTGCGAAACGTAAGTGTCACCTTAAAGATCACTTACTGACGCATAAAAATTCCACAGAGGTAACAGTCTACAAGTGCGAAATATGTGCGTATGAGACAAAGCGTAAACGTAATCTTCAGCAACACTCTAGGACTCATAAACGCTCCgcgaatgtaaatatttttaaatgtgcaAAGTGTTCATTTAATACGAAACGTAAGGAATCTCTTAATTACCACTTGTTGACCCATAAAAGCGCATCAGAGGTAACAATGTTCAAATGTAGATTGTGTTCGCATCAGacgaagaataaaaaatatcttcaaCGCCACTTGTTGACCCATAAGAGCCCCTCGTTTGAATGTGAAAAGTGTTCATTTAAcacgaaaagtaaaaataattttaaagatcACTTACTTACGCACAAAACTCCTTCGGTTATAAATATATTGGAATGTGAAATATGTCCGTTTAATACGGAGCGTAAGGATCTCCTTAAAGAccacttattgacccacaaaagccCCGCAGAGGTCTCGATGTTCAAGTGCGAGACGTGTGCGTATGAGACGAAGCGTAAACGAAATCTTATACAACACTCGTTGCGTCACAAAAGCGCCTcggatataaatatttttaaatgtgaaatatgcTCGTACAATACGAAACGTAAAGAATATCTGAATTATCACTTGTTGACACATAAAAGCGCATCGGAGGTGACGATGTTCCAGTGCGAATTTTGCTCGCATCAGACGAAACGTAAACACCATCTGAAAGCGCACTTGCTGACCCATAGAAGTTCTTTAGAGGTGACAATGTACAAATGCGAGTTGTGTTCGTATGAGGCAAAGCGTAAATATCATCTTAAGCGGCACTTGTTGACCCATAAGAGTCCTcaaattGTTCAAGAACCctcaattgaaaataaaatggcaGATGACCCTCCAGAACTACCAAAGACAAAGACCAGAGCTAGGAGGCGCACGAAGCGACGCAAGTTGACCCATGAAACAGCGTTCAAGTGTGAAATGTGCTCTTACGAGGCAAAACGTAAAGAATACTTTAGGCGACACCTACTAACCCATAAAAGCTCTTCAGATATAACAACGTACAAATGTGACACTTGTTCTTACGAGACAAAACGTAAACGTGATCTTAAGCGACACTCATTAACACATAAAAGTTTTTCAGATATAATGATTAATACTGAACATGAACCTAGAAAGAGCATGGACTTTGCTTTAAATCTCAACAATATAGAAAGTAAAGGAAGAATTACGAAACAGTTGACTTGCAAAATGGAAggtgatataataataaaagaagaaatttgtGACGAAGAACAAAATAGTAATGAGGGATTTAATTGcgataataaatatttcgtgAAAGTGGAGGATCTGAAATTTAACAACTCTGTCGAGGGCACAACTAACACATCGAATTATAAAGAGGCCGAACGTGAAGAGGACAATTTTATAGAAATGGGCAGTCAGAAATGTTTACCGTGTGGTAacgaaaaaattgaaataaaaccaGAGAAAATAGATTTAGACAGTCTCCAAGAACCctttattgaatataaaatggATAATGACCCTTTAGAGATACCAATGATTGAGGCGAGACCTAAGAAGCAACACCCGTTGACTTATAAAAGTCCCTCAGATGTAACAACGTTCAAATGTGAAACGTGTTCCTACGAGACGAAATATCAAAATTACCTTAAAAGACACTTATTGTCCCATAATACGTTCAAATGCGCAACGTGTTCGTTTAATACAAGATATAAATATTCTCTAAAAAAGCACCTATTAACTCATAAAAGTTCGTCGGAGGTAACAACGTTCAAATGTGAAGCGTGTGCGTATGAGACAAAAAATAAAGGTAATCTTCAACAACACTCGCTGACCCATAAGAGTTCCTCAGAAGTAATAACGTTCAAGTGCGAAGCGTGTTCCTATGAAACAAAACGTAAAGACACTCTAAAAAGACACTTACTAAGCCATAAGAGTCTCTCggatataaatatgtttaagTGTGAAATGTGTTCGTTTAGTACGAAACGTAAAACTTACCTTAATCGACACTTATTGGTCCACGAAAGTTCTTCAGACGTAACGATATTCAAATGTGAAGTGTGTCCGTATGAAACGATACGTAAGGATTGCCTGAAAAGACACTTATTAACCCATACGAGTCTCTCGgatataaatgtatttaaatgtgAAACGTGTCCGTTTATTACAAAATGTAAATCTTACCTTAAGAGGCATTTATTGAGTCACAAAAGTTTGTCAGAGGTAGCGGTGTTCAAATGCGAAAAGTGTGCATATGAGACGAAACATAAATATAATCTTAAGCAACACTCGTTGAGTCATAAACGTATGTCAGAAATAACGGCGTTTAAATGCGCAACGTGCCCATATGAGACAAAATATAAACGTAACCTTATACAACACTCGTTGATTCATAAGAAATTGTCAGCGGTAACGGCTTTCAAGTGTGACGCGTGTGCGTATAAGACGAAACATAAGTATAATCTTAAGAAACACTCGTTAAGTCATAAAAGTTCCTCGGATGTAAATATGTTTCGATGTGAAATGTGTCCATACGAGGCAAAACGTAAAGCTCAAGTTACAcgacacttattgacccataaaagttcTTCAGAGATAACGTTCAAATGA
Protein Sequence
MGNLERVCRLCFEISCNNVETKEGITNEVFNVLLPKINLAINDDTEICSHCAETIKKCFSFKSTCLATQECIQPFYDGNDDRKVDLKNLIYVGGNKDESTIGVTENYEICGLCMGLIKDCSFIPLGYENEDETLEKIMLEKCLPESDLSVINNPVICTPCHGSLHDYFSFVTTLEENMKSRCQVVDVNTEAPIQVDDFVQFTAQNMLESKENEHNLIKIEINVVEEYSNENISQIAEEQKLDVIKIKEEICGEAQNSDEEFDCDAKYLTTVEDGELGSFTQVTSNSSTCKEVEFKEDKPMEMVGNEDIEIKPDPVEFDSFQELFLEYKMADDPLDTSTNETSPMKQRMSKLKSSSEVLWTFKCEICSYETKRESHLQRHLLTHNSPAYVSMFECEMCSFTAKRKCHLKDHLLTHKNSTEVTVYKCEICAYETKRKRNLQQHSRTHKRSANVNIFKCAKCSFNTKRKESLNYHLLTHKSASEVTMFKCRLCSHQTKNKKYLQRHLLTHKSPSFECEKCSFNTKSKNNFKDHLLTHKTPSVINILECEICPFNTERKDLLKDHLLTHKSPAEVSMFKCETCAYETKRKRNLIQHSLRHKSASDINIFKCEICSYNTKRKEYLNYHLLTHKSASEVTMFQCEFCSHQTKRKHHLKAHLLTHRSSLEVTMYKCELCSYEAKRKYHLKRHLLTHKSPQIVQEPSIENKMADDPPELPKTKTRARRRTKRRKLTHETAFKCEMCSYEAKRKEYFRRHLLTHKSSSDITTYKCDTCSYETKRKRDLKRHSLTHKSFSDIMINTEHEPRKSMDFALNLNNIESKGRITKQLTCKMEGDIIIKEEICDEEQNSNEGFNCDNKYFVKVEDLKFNNSVEGTTNTSNYKEAEREEDNFIEMGSQKCLPCGNEKIEIKPEKIDLDSLQEPFIEYKMDNDPLEIPMIEARPKKQHPLTYKSPSDVTTFKCETCSYETKYQNYLKRHLLSHNTFKCATCSFNTRYKYSLKKHLLTHKSSSEVTTFKCEACAYETKNKGNLQQHSLTHKSSSEVITFKCEACSYETKRKDTLKRHLLSHKSLSDINMFKCEMCSFSTKRKTYLNRHLLVHESSSDVTIFKCEVCPYETIRKDCLKRHLLTHTSLSDINVFKCETCPFITKCKSYLKRHLLSHKSLSEVAVFKCEKCAYETKHKYNLKQHSLSHKRMSEITAFKCATCPYETKYKRNLIQHSLIHKKLSAVTAFKCDACAYKTKHKYNLKKHSLSHKSSSDVNMFRCEMCPYEAKRKAQVTRHLLTHKSSSEITFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-