Rmor045693.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796662.1:54272826-54275070[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.015 1.7 11.0 2.3 1 23 58 80 58 80 0.95 2 19 0.0067 0.76 12.2 1.2 3 23 86 106 84 106 0.96 3 19 0.00021 0.024 16.9 1.3 3 23 120 140 118 140 0.96 4 19 4.7e-06 0.00053 22.1 3.1 1 23 146 168 146 168 0.98 5 19 1.4e-06 0.00016 23.7 0.3 1 23 174 197 174 197 0.97 6 19 0.028 3.2 10.2 1.7 1 23 203 226 203 226 0.93 7 19 0.0015 0.17 14.2 0.2 2 23 234 255 234 255 0.92 8 19 0.36 40 6.7 0.3 1 23 272 294 272 294 0.93 9 19 0.00044 0.05 15.9 5.9 1 23 311 333 311 333 0.97 10 19 0.18 20 7.7 2.2 2 23 339 360 339 360 0.96 11 19 0.06 6.9 9.1 0.1 2 23 364 386 363 386 0.96 12 19 0.001 0.11 14.7 3.7 1 23 396 419 396 419 0.95 13 19 2.4e-05 0.0027 19.9 1.1 1 23 432 455 432 455 0.97 14 19 2.2 2.5e+02 4.2 2.6 1 19 461 479 461 484 0.91 15 19 0.033 3.7 10.0 1.6 1 23 497 520 497 520 0.97 16 19 0.018 2 10.8 0.8 1 20 529 548 529 550 0.94 17 19 0.00044 0.051 15.9 0.4 1 23 565 587 565 587 0.98 18 19 0.0034 0.39 13.1 3.1 2 23 593 615 592 615 0.95 19 19 0.033 3.8 10.0 0.2 1 22 621 642 621 645 0.90
Sequence Information
- Coding Sequence
- atggaTGAAATACCGATAAAAATAGAAGTAAATAACGAGATAAAACTAGATATTGACGATATCTTTCTCGAAGAGAAGCCCTTACATGAAGAGATAGAAAAAGATATTCCAGATTTTATAAATGTGAACAATTTTGCAGGTGACGTACCTGTAGAGGAGCGTAAAGAAATACACCGCTGTAGGTATTGCAAGAAAAAATATGTCAGACCCGAGTACGTGCAAATACATGAATATATTCATAATGCTCAGAAACATTGTCCAATCTGCGAGTTCACGTTTAGAGCTAAAAAAACTTTTATCGTTCATATAAATGGGCATGTTAAGGAAAAAATGGAGGACGAAAGGAGAAGTTTATTTTGCGATTTCTGTCAAAAACCGTTTAAGAAAAGGAGAGCTCTTACGCTTCACTTGAGAGTGCACACTAACGAGCGCCCTTATAAATGCCATATATGCGAGAAGACGTTTAAACAAAAGGGATCCCTAACTGACCACAACATCACACATACAAATATTAAAGCCTTTCCATGTGAGATATGTTCAGGATCTTTCACCACTGCCTCCAGTTTGAAGAGACATATAAGGAGAATTCATGATGCAGGGAAAACCTATGTCTGCAAAATTTGTTCACAGAAATTGGACAATTACAGTTGCCTTCAGCAGCATAGGGCAGAACTACATCCTGAAGCAAGCGAGCATCGACAGTGCCCTATTTGCCCCATGGTATTTAAAAGCATGTATgcttataaaaaacataaaggGGAACATGAAAAAAAGGGCGAGTTTGTGGATGAGAGTTTGCTACCCAAGACGAAATATAGGTGTATATTGTGCGGTGTGAAATTTATAGATTCCAAACTATACGTACAACACAAAGAAGAGCATCTTCATTATAACAAAGAAGATTTTCAGAAAGCGCAGAAAAATGGATTGTTTAGTTGCAAGTTGTGCCAGAGAGGTTTTCGACATAAACAAAGTCTTTTTAAACATATGTCATATCATATGGACAAGACTGAAAAATGTAACATTTGCGAAGAGTTCTTTAGCTACTATTCATTTTCAAGTCACAAACGCAGAAATCACTCGCCATTAAAGTGCAAAATTTGCGAGGAACTTGTAGAAGGTAAAGGGATGTTGATTCGCCATTACAGAATAACCCACCCAGACTTAAGATCTCGCGACAGAAAATATTTGTGTCACATATGTAACAAGACTTACAAATCCAAATTCCCACTAGAAGTACATTTGCAAATTTGTCATGGGAACTCTGATAATCTCGCTGATAATAACAAGACACATAAGTGCAATGTTTGTGGGAGAGAGTTCAAGACGAGAGCGGTTCTTAATGTACATATGACTAAAGTACATCCAACCGGTGCAACGTTTAAGTGTGATTCTTGCAACATCTTATTCCAAAACCACACAAAACTTCTAAAGCACAATGGTCTCTATCATCAAACAGCTATCAAGAGACGCAATAAAAATAAGTCATATATTTGTACATTTTGTAATCAAGAGATTAGCACTTTACCTTTACTCAGACATCACTGGAAAACAAAGCATAAGGTTGCAAAACCGTCAGCGCAGTTTCAATGTAAAATATGCTTGAAATACTTCAAGAATGCCAAGAGCCGAACGGTTCATCTTGAGAATATGGTTTGCACAAAATTCTTTGAGAAAACAAAGAAACATTTGTACAAATGTACTATTTGTCAAAGAGAGTTTGCGTTTAGAAATTTAGTCAAAGCTCACATGGTGGTGCACTCAAAATTCTACAAGACTTGCAGGTTTTGTAATATAACTTTCACAAGGACTCATAACCTTAGTCTACATATCCAAAACGCGCATCCCAGTGAGAAAGTATACTACTGCGGGTTTTGTGACATGGAATTTATCGATCTACTACAGCTAAAGGTTCACCGATATTCTCCCGCCCACAAGACTATGATCGAATGTAAAGCAGAAATTGTGGAAGAAAACGGCGAAAAAAATGGTGTCAGTGAGGAAGAAGTCATTAAGaaagaagatgaaataaaaaaggaacctgtagattaa
- Protein Sequence
- MDEIPIKIEVNNEIKLDIDDIFLEEKPLHEEIEKDIPDFINVNNFAGDVPVEERKEIHRCRYCKKKYVRPEYVQIHEYIHNAQKHCPICEFTFRAKKTFIVHINGHVKEKMEDERRSLFCDFCQKPFKKRRALTLHLRVHTNERPYKCHICEKTFKQKGSLTDHNITHTNIKAFPCEICSGSFTTASSLKRHIRRIHDAGKTYVCKICSQKLDNYSCLQQHRAELHPEASEHRQCPICPMVFKSMYAYKKHKGEHEKKGEFVDESLLPKTKYRCILCGVKFIDSKLYVQHKEEHLHYNKEDFQKAQKNGLFSCKLCQRGFRHKQSLFKHMSYHMDKTEKCNICEEFFSYYSFSSHKRRNHSPLKCKICEELVEGKGMLIRHYRITHPDLRSRDRKYLCHICNKTYKSKFPLEVHLQICHGNSDNLADNNKTHKCNVCGREFKTRAVLNVHMTKVHPTGATFKCDSCNILFQNHTKLLKHNGLYHQTAIKRRNKNKSYICTFCNQEISTLPLLRHHWKTKHKVAKPSAQFQCKICLKYFKNAKSRTVHLENMVCTKFFEKTKKHLYKCTICQREFAFRNLVKAHMVVHSKFYKTCRFCNITFTRTHNLSLHIQNAHPSEKVYYCGFCDMEFIDLLQLKVHRYSPAHKTMIECKAEIVEENGEKNGVSEEEVIKKEDEIKKEPVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -