Rmor002017.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:26129327-26163451[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.2e-06 0.00048 22.2 0.8 1 23 360 382 360 382 0.98 2 12 0.011 1.2 11.5 0.1 1 23 384 407 384 407 0.96 3 12 1.2e-06 0.00013 24.0 1.5 2 23 891 912 890 912 0.97 4 12 0.00071 0.08 15.2 0.5 1 23 918 940 918 940 0.97 5 12 0.00052 0.059 15.6 1.4 1 23 946 968 946 968 0.97 6 12 8e-05 0.009 18.2 1.5 1 23 974 996 974 996 0.98 7 12 0.0006 0.068 15.5 0.7 1 23 1002 1024 1002 1024 0.98 8 12 9.3e-07 0.00011 24.3 1.7 1 23 1032 1054 1032 1054 0.98 9 12 0.0071 0.81 12.1 0.2 1 23 1060 1082 1060 1082 0.96 10 12 5.5e-05 0.0063 18.7 1.3 1 23 1088 1110 1088 1110 0.98 11 12 0.005 0.57 12.5 0.5 1 23 1116 1138 1116 1138 0.97 12 12 4.4e-05 0.005 19.0 0.8 1 23 1144 1166 1144 1166 0.97
Sequence Information
- Coding Sequence
- atggCTGCGGTTGAAAATCCAAAATTTGAGGAATTATGTAGACTGTGTGCAACAAAAACAACAATGGTTTTAGCTAtcaatatatttgaaaatgagGGGACGATACGAcaaattagcaaaaaaatttgTACTTGTCTTCCCATTCagGTTCATGAGACGGATGAGTTACCAAAAATGATTTGTGAAAATTGTCTATATAAGTTGGAGTTGTTTTGTGATTTTCGGGAACGTTCAGCACGGACAGAGAGGTTGTTAGTAGAACTGTATAAGGAATTAAATTCGACAAGAGCACAGAATGATCAACAGCCAACCTGCATTGTTCCCATGGAtcataatgaattaattatggtACAACATCATCAATTATTAAATGACGAAAATTTACAGAGTGTGTCGGAGATAGACTTAACTCATCTTGGTCAGCGTGAGGGTATGATTGTAGAGCACGAGATTATATTAACGCATCATAATGTAGATATGAACTCACATTCGCTTGATAGTattgatttaaataatcatGATTTAACTACCCAAGATCTTtcaaatcaaagttttaaaactCAAGAATCCATAATGGTCGATTCTAATGCTCATAGTATGCATGATCCTCAGTTTACAGaagacaatttaaatttaattcagcAGCACCAACTATTATCAGATCAGTTTAGACTTCAACATGATTTACATGTAAATATAGGAGAGGAGAATTCAGAAAATGATATACCATTAACAAATGAAATAAAATGTGATCTTCAACAACAAAATGACAAATACGATTTAGAGAATAAATTGGAATTTgccgaaaaaaaaatagaagacaATAATTCCCTTTCGGTTGACCCGAGGGTTGACCCTCAATTAAATAACATTCAGTTACACAATAACTACAGTAAAGAGGTGAATCTAAAAATGGATGGTTTTAAACATGAGGACAGCAATAGTGCACATTCTTTATTAGTGGATGAACAGTTAAATAACGTTAGTGTGCCAAATTCAATAACAGACAAGCAAGTTTACAGTTTTAATATAGAGAACAGTGAATCATTAGTATATTTAAGTAATACTAAAGATTggttttattgtaatatttgtgGAAAATCGTATGAGCAGAAGTCCGAATTTGAGGTGCACTACGagacacatttttataaatgtacAATTTGTTTGGCAGTATTCACAAATGTGGATGTTCTAAATTCGCATAGAAAAGAAGCCCATGGTGCTTGTGTTGATGATCCAAAGATGTCAAGACGCACATGTCGAAGGAAAACACAGATGCAATCCGGCCCCAAAGATACAACGGGAAATGCTGTAGAAATGAGTACAAAGCGATCGAATCTAGAAGTTGAGGATAAAAAAGTCCGCCGTAGCCGGACCTACAGAGGAGggcAGAGACCAATTTTTAATGAGGCCCAAGAGAAAGAACTAGCGAACCATGTCCtgtttatgcaaaaatgtatgtttGTTTTTTCGTGGAAGGATGTGAGAAGTTTGGCATTTGAGCATGCCATTAAGTATAACCTACAACATAAATTCAATCAATCCTCGAAATTAGCAGGAAATACATGGCTGCGTAATTTTCTGACATGTTATTCCGAGTTAAAGTTAAGAAACCGTGATTTCCTTCGAATAGGTTTTGACAGAGAATCAGCTTCAGCATTTTTTTCTCGTCTGTCTGCTgaatatgaaaaatacaattttccccCAGACCGAATTTGGAATGTAGATTCAACAGGAACTGATACAGCAAAATCAACAGTATTTGCTTTAAGAGTCAATAATCAAGCCGAATCGTTAAATTCAGCAAAGAGAGGAAATTTAGTAACGGTTGAAGTGTGTATGAGTGCTGCTGGTTCATTCATGCCACCCATGTTTATCTTTCCGACACAAAAAGCTTATCCTGCATTGTTAGATCAAGCACCACCAGGTTGCTTCGTGGAATACCAAGAATCGGGACAGATGCAAAAAGAGATTTTCATTAAATGGCTTAAaaggtttattaattttgtaaatcCTTCTGTGGAGAATCCTGCTCTTTTACTCTTAGATGGACATGTTACCCACACAAAAAGCTTGGAGCTAATCAATATAGCTCGGGAGAatcatgttttaattttatgctTTCCTCCTTATTCTACACACCGCATACAACCGCTGGACGTTGCATTCATGGCGCCTATGAACCTACATTATTCTCAAGAGGTTATAAAGTGGCGGAATCAATATCCCGGATGTCCTCTAACTATCGGCCAAGTAGCAGATTTCTATCAGGCAGCATTCATTAAAGCCGCTACCATGAAGACAGCCTTGGACGGTTTCAGAAAAACTGGAATATGCCCTTTGAATCCGAATGACTTTCTTAACTTAATTTTTGGACCTCCGGAAGCTACAGAAATAGCTGCCCCAGGAGAAGTGTTTAACGACTCCTCTGCTTCACCTCAACCATTTAACTCCACCACAATAATACAAAATCCACCTGTAAAAACAAGACTGAAAAGAGCAACCGTACCTGTTCGAGATGAAAATGGTTTGAAAACAGATAGTAATAGTGATGATAGTGAAGGTGAATGTGATAATAGTCaaatagaagaagaagaggaactAGACGATCCTGGCAATCCAACAGAGCCTGGtgcaaataataaaagaagaaaatggTCTCCGAAAGTATGTAAAGACTGTGGTAAAACTTACAAAACGAATTATAAATTAGCAGAGCATATGAGAAAACATACAGGAGAGAAACCGTACAAATGCAAATCTTGTGAAAAGGCGTTTAGGTCAAAAATTGGATTGGCACAACATGAGGCTAAACATACAGGTCAGTATGATTTTGCCTGTCCAACATGTGGAAAGGGTTTTCAGTGCAAGAGCTATCTGATGGTTCATCAGAGGGTACATTCTGATATCAAACCTTATCCATGTACAACCTGTGGtcagaattttaaaacaaaacagtCTCTTCTAGATCATACTAATAGGCATTTAGGCGTAAAACCATATATGTGTGATATTTGTGGTCGAGGGTTTATAACAAAAGgttTATGCAGAGCACATCAGAAGGTACATTCTGGATTAGATAATAGAAAATATTCATGCAAAATTTGTAGTAAAATGTTTGTATCCAAGAGTTATTTACAAACTCATTTAAGGATACATACAGGAGAGAAACCCTTTATGTGTGAGGTTTGTGGCAAGGGCTTCCTTACCAGAGTGGATTTGAAGATACACTCAACAATGCATACAGGTGAAAAATCTTATGTTTGTGAAATGTGTGGCAAAGCTTTTGCTAGAAGAGATGCATTGCGTTGTCATAGAAGGTCTCATACAGGGGAAAGACCATACAGCTGCGATCTTTGTGGGCAAACATTCACTCAATTTACACCAATGGCAATTCACAAACGTCTACATACTGGTGAACGACCCTATGCCTGTGAAACTTGTGGAAAAACATTTGTGTCAAGGTCGACTATGATGTCTCATGCAAAGAAACATGTACGGTGA
- Protein Sequence
- MAAVENPKFEELCRLCATKTTMVLAINIFENEGTIRQISKKICTCLPIQVHETDELPKMICENCLYKLELFCDFRERSARTERLLVELYKELNSTRAQNDQQPTCIVPMDHNELIMVQHHQLLNDENLQSVSEIDLTHLGQREGMIVEHEIILTHHNVDMNSHSLDSIDLNNHDLTTQDLSNQSFKTQESIMVDSNAHSMHDPQFTEDNLNLIQQHQLLSDQFRLQHDLHVNIGEENSENDIPLTNEIKCDLQQQNDKYDLENKLEFAEKKIEDNNSLSVDPRVDPQLNNIQLHNNYSKEVNLKMDGFKHEDSNSAHSLLVDEQLNNVSVPNSITDKQVYSFNIENSESLVYLSNTKDWFYCNICGKSYEQKSEFEVHYETHFYKCTICLAVFTNVDVLNSHRKEAHGACVDDPKMSRRTCRRKTQMQSGPKDTTGNAVEMSTKRSNLEVEDKKVRRSRTYRGGQRPIFNEAQEKELANHVLFMQKCMFVFSWKDVRSLAFEHAIKYNLQHKFNQSSKLAGNTWLRNFLTCYSELKLRNRDFLRIGFDRESASAFFSRLSAEYEKYNFPPDRIWNVDSTGTDTAKSTVFALRVNNQAESLNSAKRGNLVTVEVCMSAAGSFMPPMFIFPTQKAYPALLDQAPPGCFVEYQESGQMQKEIFIKWLKRFINFVNPSVENPALLLLDGHVTHTKSLELINIARENHVLILCFPPYSTHRIQPLDVAFMAPMNLHYSQEVIKWRNQYPGCPLTIGQVADFYQAAFIKAATMKTALDGFRKTGICPLNPNDFLNLIFGPPEATEIAAPGEVFNDSSASPQPFNSTTIIQNPPVKTRLKRATVPVRDENGLKTDSNSDDSEGECDNSQIEEEEELDDPGNPTEPGANNKRRKWSPKVCKDCGKTYKTNYKLAEHMRKHTGEKPYKCKSCEKAFRSKIGLAQHEAKHTGQYDFACPTCGKGFQCKSYLMVHQRVHSDIKPYPCTTCGQNFKTKQSLLDHTNRHLGVKPYMCDICGRGFITKGLCRAHQKVHSGLDNRKYSCKICSKMFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLKIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYACETCGKTFVSRSTMMSHAKKHVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -