Rmor009250.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:102975744-103001683[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00025 0.029 16.6 1.3 1 23 325 347 325 347 0.97 2 18 0.037 4.2 9.8 0.4 3 23 354 374 353 374 0.98 3 18 2.7e-05 0.003 19.7 1.4 1 23 380 402 380 402 0.96 4 18 5.3e-06 0.00061 21.9 3.6 1 23 408 430 408 430 0.99 5 18 0.00022 0.025 16.8 2.1 1 23 703 725 703 725 0.98 6 18 0.037 4.2 9.8 0.4 3 23 735 755 734 755 0.98 7 18 2.7e-05 0.003 19.7 1.4 1 23 761 783 761 783 0.96 8 18 5.3e-06 0.00061 21.9 3.6 1 23 789 811 789 811 0.99 9 18 6 6.8e+02 2.9 0.2 1 12 817 828 817 831 0.81 10 18 4.5 5.1e+02 3.2 0.4 2 23 1082 1103 1081 1103 0.93 11 18 0.0073 0.83 12.0 0.4 2 23 1121 1143 1120 1143 0.93 12 18 0.14 16 8.0 4.7 1 23 1148 1171 1148 1171 0.94 13 18 0.00051 0.058 15.7 2.6 1 23 1205 1228 1205 1228 0.97 14 18 0.0016 0.18 14.1 0.3 1 23 1238 1260 1238 1260 0.97 15 18 0.02 2.3 10.7 0.1 3 23 1267 1287 1266 1287 0.96 16 18 0.0001 0.012 17.9 5.0 1 23 1293 1315 1293 1315 0.98 17 18 1.1e-05 0.0012 20.9 2.4 1 23 1321 1343 1321 1343 0.99 18 18 0.00041 0.047 16.0 0.1 1 21 1349 1369 1349 1370 0.95
Sequence Information
- Coding Sequence
- ATGCGgataaCATTTGACAATGGTTTGTCTACATGTACAATAGATACGAAACTTGCGTTTTTATTAGCAACTGTTGATTCAGAACCTACATACTTATCTACAAACCCAAACCCTACTGAGTCCGATCCCCTGGCAGGATCAGTATCAACTCAACAAAATCAGCTAAACTCAGAAAAATCACAAACTTTTGAAACATCTTCAAATACCTTCACCCGAGGCGATCCAAGGTACATGAATATTAGAAATTTGTATATGAATCCAAGACAATCCTTAACCATTGGTGCATCTTCTAATAACCTCATCCGAAATGATGAAAGGTGCacaaatatgaataatttttatgtgAACCCAGAACAACCGTTATCAACAAAATTCCAAAATGTTACATCGAGCATTCATACTAATCCACAAAATATAATTACCCATTTACCATCTGTGGCAAACTTATACTCAACTTATCCACCTATGGTAAATTTGTGCCAAATATCTAGAATGCCACAACAATACTATGCAATGAATAATTCCTATGGAGTACTACCAATATCAGCCAATACGCTTGTAAATGGTGGTGCGCCGATTAATCAGAATAAAACGGTAGATCCAAGAACCTcgcaaaatgaaataaaaaatataacgtttCCCCATCGGCAGTCTAACCTGCCAGCAAGCAGTGATACTACTCTAGTTCGTTCAGATCCTAATACAAATAAGGACGAAGTTATGTCAACGGAGTATGAAAATCCTTTTAATTACTCAAAATTCAACGTGGCAGAATTATGCAGACTGAAAACAAAAGACCTCCCTCCTCAAGTATTTATTAAATGGATGTGTTTAATATGTTGTGAAGACCAGAAAAACAAGCAGTCCTTAATGGACCATTATGAATTTCACAAAGAGGAAAAAGACAAGTTGGACGCAAAATACACTGACACAGATTCCAATATACAAAATCATGGCAATATTATAAAGAAGCATGAATGTGAAACCTGTAACCAATTTTTTGCAGATGCAAAAGCTCTCAACAGGCACTTATACACCCATTCGATAGAACGTGCCCTTTGTTATGTATGTGGAAAGGTATTTGGAGATGCGCGTAAAttatcattccatttaaaaacacaTTCTGATGATAGAAGGTACCTCTGCAAAGATTGTGGAAAATCATTTTATAAGAGCAACGATCTTGTATCGCATTCGCGAACACATAGCGGAGAAAAGCCTTACAAATGTGAAActtgtgaaaaatgttttacCCAGAGATCCTCTTTAGTTATTCACCAAAGACTTCATACAGGCGAAAGACCATATGTATGTCCCACGTGTAATAAGGGgataaCATTTGACAATGGTTTGTCTACATGTACAATAGATGCGAAACTTGCGTTCTTATTAGCAACTGTTGATTCAAAACCTACATACATATCTACAAACCCAAACCCTACTGAGTCCGATCCCTTGGCAGGATCAGTATCAACTCAACAAAATCAGCGACAACCGTTATCAACAAAATTCCAAAATGTTACATCGAGCATTCATACTAATCCACAAAATATAATTACCCAATTACCATCTATGGCAAACTTATCCTCAACTAATCCACCTATGGTAAATTTGTGCCAAATATCTAGAATGCCACAACAATTCTATGCAATGAATAATTCCTATGGAGTACTACCAATATCAGCCAATACGCTTGTAAATGGTGGTGCCCCGATTAATCAGAATAAAACGGTAGATCCAAGAATCTCGCaaagtgaaataaaaaatataacgtttCCCCATCAGCAGTCTAACCTGCCAGCAAGCAGTGATACTACTCTAGTTCGTTTAGATCCTAATACAAATAAAGACGAAGTTATATCAACGGAGTATGAAAATCCTTTTAATTACTCAAAATCCAACGTGGCAGAATTATGCAAACTGAAAACAAAAGACCCTCCTCCTCAAGTATTTATTAAATGGATATGTTTAATATGTTGTGAAGACCAGAAAAACAAGCAGTCTTTAATGGACCATTATGAATTTCACAAAGTAGAAAAAGACAAATTGGCAAAAGACACTGACACAGATTCCAATATGCAAAATCATGGCAATATTATAAAGAATCATAAATGTGAAACCTGCAACCAATTTTTTGCAGATGCAAAAGCTCTCAACAGGCACTTATACACCCATTCGATATCTCTGATAGAACGTGCCCTTTGTTATGTATGTGGAAAGGTATTTGGAGATGCGCGTAAAttatcattccatttaaaaacacaTTCTGATGATAGAAGGTACCTCTGCAAAGATTGTGGAAAATCATTTTATAAGAGCAACGATCTTGTATCGCATTCACGAACACATAGCGGAGAAAAGCCTTACAAATGTGAAActtgtgaaaaatgttttacCCAGAGATCCTCTTTAGTTATTCATCAAAGACTTCATACAGGCGAAAGACCATATGTATGTCCCACGTGTAATAAGGGGATTACAACATTCGCAAATTGTGTCACGCAAAATACATCAAGAACTGTAGAATTTAAACCAAATGTATCTTCTATTCGTACCGAGACCGATCCTCTGGCTACTATAAACACAACCCAAAAAAGCCCCTATATGTTGGTTTTGCCCTCGATGTTAACTTTAGGCTACGTAAAGTGTCCCAGTAATAcaactttaaatataaattctaGGCTGCCTCTAACTTTTGTGACACGACCACCAACAGCAAATGTAGGAACTAGACCTCAGAATATTTTAACGACGCAGAGACAACCTACAGTTAATGTATGTCCAATCCCTGGAATGATTCCAAAACccgcaataaataataatacttataGGATGCCAACATTAATTTCTAATGGAGTAGTAATGGGTGGCCACCCTGTTGTTACTTTGACTAATACTAACATAACTACATCCTCGCCAAGTATAGTGACAGTTCCTCATGGTAAATCTTCGGTAACGAATACAGCGCAAAAAATGTTCACATTTCCTCCTCAACAGACACCTTTGATAGCTAATTCCGGAAATGTTATACTCCATAAGGGATTTGTTACAGTCCCCCAAATAATACCTATGAACTCGCAAATGTCTACGTCAGCTACTTTaggaaattcaaatttaaacaaaCTGACACCAAGATATAAAAATCCCTTTCATTACTCAGATTACAAAATGGACTCTGTAGTACGAGATCTTGGGACTAAATCGAAAGGAAAAATTGAACCCGTTAAGAAATCCAAAAAATGGACTTGTATGATATGTTTTAAAGTGAAAGAAAACAAACAGTCTTTGATAGCTCATTATGAATTTCACAAAGGAGAAAAGGACAAACTCGGCGGCAAGAATGTTAATACGGATTTGATGGAGTGCCCTACGTGTTTTAAGCAGTTTAATTCATTGGATATGTACAACCGACACGTACAAGATGTACACGACGAAAAAGAATTTTTCTGCCATTTATGTAGTAGAAGTTACAGAGACGCTTACAGATTAAGTATACACATTTCTCATAAACATTCCCCTCATCCAAATATCTATACATGTTGTATTTGCCAATCCTTTACTAGCAAATTTTCACAGGAGCTTCAGCGCCACATCAGTCTAAATCATATAACTTATACATGCAAAATTTGCAAGAAAGAATTCATTCAAAATCGCTATCTTGCAAATCACAATAAAAAGTATCATGCAACTGCTCCTAGAGAAGCAACAAGCTATGAATGTGAAATCTGTAACTTACCTTTCGCTAATAGAAAGGCTTTTCTTAGACACTCCAGTAGCCATTCGGCGGAAAGTAGCCTTTGTTTCGTATGTGGAAAAGTATTTGGAAATGGTGACAAATTAGCAAGCCACCTAATACTACATTCTGGATCCAAGAAGTTCATTTGCAATGTGTGCGGAAAATGTTTTCATAAAAGTAATACACTCGTCAATCATCTACGGACTCATAGCGGAGAAAAGCCTTACAAATGTGTAACATGTGGAAAATGTTTTTCGCAAAGGAGTCCTTTAGTTATTCACCAAAGACAACATACCGGCGAAAAACCATACGTATGCCCCACGTGTAATAAAGGATATGTATCGAAAAGCGCTCTAAGTATCCACCGTAAgagttgtaaataa
- Protein Sequence
- MRITFDNGLSTCTIDTKLAFLLATVDSEPTYLSTNPNPTESDPLAGSVSTQQNQLNSEKSQTFETSSNTFTRGDPRYMNIRNLYMNPRQSLTIGASSNNLIRNDERCTNMNNFYVNPEQPLSTKFQNVTSSIHTNPQNIITHLPSVANLYSTYPPMVNLCQISRMPQQYYAMNNSYGVLPISANTLVNGGAPINQNKTVDPRTSQNEIKNITFPHRQSNLPASSDTTLVRSDPNTNKDEVMSTEYENPFNYSKFNVAELCRLKTKDLPPQVFIKWMCLICCEDQKNKQSLMDHYEFHKEEKDKLDAKYTDTDSNIQNHGNIIKKHECETCNQFFADAKALNRHLYTHSIERALCYVCGKVFGDARKLSFHLKTHSDDRRYLCKDCGKSFYKSNDLVSHSRTHSGEKPYKCETCEKCFTQRSSLVIHQRLHTGERPYVCPTCNKGITFDNGLSTCTIDAKLAFLLATVDSKPTYISTNPNPTESDPLAGSVSTQQNQRQPLSTKFQNVTSSIHTNPQNIITQLPSMANLSSTNPPMVNLCQISRMPQQFYAMNNSYGVLPISANTLVNGGAPINQNKTVDPRISQSEIKNITFPHQQSNLPASSDTTLVRLDPNTNKDEVISTEYENPFNYSKSNVAELCKLKTKDPPPQVFIKWICLICCEDQKNKQSLMDHYEFHKVEKDKLAKDTDTDSNMQNHGNIIKNHKCETCNQFFADAKALNRHLYTHSISLIERALCYVCGKVFGDARKLSFHLKTHSDDRRYLCKDCGKSFYKSNDLVSHSRTHSGEKPYKCETCEKCFTQRSSLVIHQRLHTGERPYVCPTCNKGITTFANCVTQNTSRTVEFKPNVSSIRTETDPLATINTTQKSPYMLVLPSMLTLGYVKCPSNTTLNINSRLPLTFVTRPPTANVGTRPQNILTTQRQPTVNVCPIPGMIPKPAINNNTYRMPTLISNGVVMGGHPVVTLTNTNITTSSPSIVTVPHGKSSVTNTAQKMFTFPPQQTPLIANSGNVILHKGFVTVPQIIPMNSQMSTSATLGNSNLNKLTPRYKNPFHYSDYKMDSVVRDLGTKSKGKIEPVKKSKKWTCMICFKVKENKQSLIAHYEFHKGEKDKLGGKNVNTDLMECPTCFKQFNSLDMYNRHVQDVHDEKEFFCHLCSRSYRDAYRLSIHISHKHSPHPNIYTCCICQSFTSKFSQELQRHISLNHITYTCKICKKEFIQNRYLANHNKKYHATAPREATSYECEICNLPFANRKAFLRHSSSHSAESSLCFVCGKVFGNGDKLASHLILHSGSKKFICNVCGKCFHKSNTLVNHLRTHSGEKPYKCVTCGKCFSQRSPLVIHQRQHTGEKPYVCPTCNKGYVSKSALSIHRKSCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -