Rmor009241.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- znf711
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:102876312-102890403[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.34 39 6.8 2.0 1 23 81 103 81 103 0.97 2 21 7.9e-05 0.009 18.2 2.6 1 23 106 128 106 128 0.97 3 21 0.00022 0.025 16.8 4.4 1 23 134 157 134 158 0.97 4 21 0.018 2 10.8 2.4 1 23 169 192 169 192 0.95 5 21 0.00031 0.035 16.4 0.4 3 23 203 222 201 222 0.97 6 21 5.6e-06 0.00063 21.8 3.0 1 23 228 250 228 250 0.98 7 21 0.015 1.7 11.0 0.1 2 23 302 323 301 323 0.94 8 21 0.011 1.3 11.5 6.6 1 23 329 351 329 351 0.98 9 21 0.0059 0.67 12.3 1.2 1 19 354 372 354 375 0.89 10 21 0.00016 0.018 17.3 1.5 1 23 380 403 380 404 0.97 11 21 0.78 89 5.7 4.6 1 23 415 438 415 438 0.95 12 21 0.0022 0.25 13.7 2.3 3 23 449 469 447 469 0.97 13 21 2.3e-05 0.0027 19.9 2.2 1 23 475 497 475 497 0.98 14 21 2 2.3e+02 4.4 6.8 1 23 603 625 603 625 0.97 15 21 0.077 8.7 8.8 6.2 1 23 628 650 628 650 0.95 16 21 8.4e-05 0.0096 18.1 1.7 2 23 657 679 656 679 0.96 17 21 0.00071 0.08 15.2 1.6 1 23 688 711 688 711 0.92 18 21 0.0025 0.29 13.5 1.9 3 23 722 742 720 742 0.97 19 21 0.0013 0.15 14.4 0.6 1 23 748 770 748 770 0.98 20 21 0.0031 0.35 13.2 1.5 1 23 776 798 776 798 0.98 21 21 5.1e-05 0.0058 18.8 0.3 2 21 805 824 804 825 0.93
Sequence Information
- Coding Sequence
- ATGCAAAGTCAAAGAAATAGGAGGCCACCAAAAAGAAATaggatcAACGGAATAGAGAAGAAAATCGCGTCAACCaataagaaaaaagaagaaCCTGAACCTGAAATAGATGAAAAAGCCAGCAAGCTtatcaacatactaaaagtaACTGATCCCCTAAAATGCAAATCGTGCATCAAAACATGTTCAAGTCATAATGATATGGCATTACATTCAAAAGTGCACAGTACAGATCATCATTATATTTGTCATTTGTGTGATTTTAAAGTTAATTCAAAATTCCGTATTCAGATGCATATAAGAGGTCACAGTGGTTATAAATGTGAGGTATGCAATAAAACCTTTAAACGAAGCAGCAGCGCCCTCAAGCACTCCTATACGCACTCTGGCGAAAAGCCATATGAATGTGAAATTTGCGGGAAACATCTTACACATGCGAAAAGTTTGTTCACACATCTCAATACTATACATCACGAAATTATTACTGGAAAACCTTTAGTGAAATATGACTGCGTCGTTTGCAAGAAACATTATGAATCAGAAACTGGCCTAAGAAGGCATTATTCAAGCAAACATAAAGAACTTGGAGTCGACTTATCGGTAATTTGCGAAATATGTGGTAAAAGAATATCTAAGAACACATTAAAGCGTCATATTAGAACTCATACTGGACAAAAACCTTATCCGTGCCTTGTGTGCACTAAAAGTTTTACGACTAAATGTCTGCTGACAACTCATATGCGAGTTCATACTGGTGAAAAACCATTTGTTTGTATATCTAAAGATGGAAATAAGTCTAAAAAGAGAGTAGTTAAGAAAAAACTTAACAAAAAGCCCTTCTCCTCAATTAAGAATGAAAAACAGAACGAAATTACAAACATCTTTGAATTAAAAGAACCcgtggtttgtaaaatttgtagcAAAAGTTACGATAACAATGTGGACTATGCCTTACATTCAAAAGCCCATACTACAGATGGCAATTATTCCTGCCACTTGTGTGATAAGAGAATGTATAAAAAGGATCACTTTCAGAGGCATATTTTGTCTCACAATGGTTATAAATGTGGAATATGTAGCAAAGTTTTTAAGAGACGGTCTACAGCTCTATACCACTCACATAGTGGAGAAAAATTATTCCAATGTGAAATATGCGGAAAACATTTGGGTTCATCATGGAGCTTGAATTCACATCTCAACACCATCCATCATGAAATCATCACTGGAAAACCGTTACAAAAATATCATTGCACAATTTGCAACAAGCATTATTTGTATGAAAGTGGTTTAAAATTACATTACTCCAGCCAGCATAAAGAATTGGGTATCGATTTCTCTGTAATTTGTGATATTTGCGGAAAAAGAATTTCGTGCAAAAGTAAATTAAAGCAACATCTTAGAACTCACACTGGAGATAAACCTTTCTCGTGCTATATGTGCAACAGAAAATTCACAACGAAAGATTTAGTCACTTCTCATATGAGGGTACACACTGGTGAAAAGCCGTATATAAAGagagaaacaaatgaaaaaaatacttcAAAACTGAAAAAATCAAGGCCTAAAATTTCATCTCCAAAGAAAAAGCCACTAGATGAATATGTTTCTGACCcagattttattgtaaaagaAAGGACTCCGGCAAAACCTCGTTGTCGTAAATCCTCCCCGGAATTAGACCGACTcgacaaatttataaatttaaatgagctaacaaaaccGCTACAGTGTAAAGAGTGTAGTGACGCCTTCAGCAGCAATCTTGAATTTGGGTTTCATTCTAAAGTTCATAGTGAAGATGGTCTGTATTCTTGCCACATGTGTGATTGCAAAAAAGAATCGAAGAGGTCATTTAAGAATCACATAAGAGGACACGACgtatttaaatgtaaaaagtgtaaaaaaatatttaaaagcagAGGTTGCGCATTTAAACATTCTGAATCACATACTACTCAAAAACCTGTTCAGTGTGAGATATGCGGGAAAAACCTTAAAAGTTCCAAACATTTAAAAGTAcatctcaaaaatatgcattcaaATGATAAACCGGTAGTTTCATTTAAATGTACTGTTTGTGATAAAGAGTACAAAAACGCGACCAGTTTAAAGGGGCATTATTCTTTTAATCACAAAGAACTAGGAATCGATATGTCGGTGATCTGTGACATTTGTGGTAAAAGACTTTCTTGTAAAGGCAAATTAAAACAACATCTTAGAACACACACTGGAGATAAACCTTTTTCCTGCACTGTGTGTTCTAGAACATTTGCTTCTAAGGACATAATAACATCGCATATGAGGGTACATACCGGTGAAAAACCATACGTGTGTATGTATTGTGGTAAGAAATTCGGTCATGGAGCTCCCTACAGATATCATATAAAAACCCATACTGGCGAAAGATCATGTAACTGCCCGATTTGTGGAAAAGGGTTTATATCGAAGGCAAATATGAGAATTCATATAAAAAGTTGTATTATACCatcaaaataa
- Protein Sequence
- MQSQRNRRPPKRNRINGIEKKIASTNKKKEEPEPEIDEKASKLINILKVTDPLKCKSCIKTCSSHNDMALHSKVHSTDHHYICHLCDFKVNSKFRIQMHIRGHSGYKCEVCNKTFKRSSSALKHSYTHSGEKPYECEICGKHLTHAKSLFTHLNTIHHEIITGKPLVKYDCVVCKKHYESETGLRRHYSSKHKELGVDLSVICEICGKRISKNTLKRHIRTHTGQKPYPCLVCTKSFTTKCLLTTHMRVHTGEKPFVCISKDGNKSKKRVVKKKLNKKPFSSIKNEKQNEITNIFELKEPVVCKICSKSYDNNVDYALHSKAHTTDGNYSCHLCDKRMYKKDHFQRHILSHNGYKCGICSKVFKRRSTALYHSHSGEKLFQCEICGKHLGSSWSLNSHLNTIHHEIITGKPLQKYHCTICNKHYLYESGLKLHYSSQHKELGIDFSVICDICGKRISCKSKLKQHLRTHTGDKPFSCYMCNRKFTTKDLVTSHMRVHTGEKPYIKRETNEKNTSKLKKSRPKISSPKKKPLDEYVSDPDFIVKERTPAKPRCRKSSPELDRLDKFINLNELTKPLQCKECSDAFSSNLEFGFHSKVHSEDGLYSCHMCDCKKESKRSFKNHIRGHDVFKCKKCKKIFKSRGCAFKHSESHTTQKPVQCEICGKNLKSSKHLKVHLKNMHSNDKPVVSFKCTVCDKEYKNATSLKGHYSFNHKELGIDMSVICDICGKRLSCKGKLKQHLRTHTGDKPFSCTVCSRTFASKDIITSHMRVHTGEKPYVCMYCGKKFGHGAPYRYHIKTHTGERSCNCPICGKGFISKANMRIHIKSCIIPSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -