Rmor030062.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796659.1:75943986-75946031[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 7.1e-05 0.0081 18.4 1.0 1 23 180 202 180 202 0.99
2 12 1.4e-05 0.0016 20.6 0.9 1 23 224 246 224 246 0.96
3 12 0.00073 0.083 15.2 0.3 1 23 252 274 252 274 0.97
4 12 0.00049 0.056 15.7 2.3 1 23 280 303 280 303 0.93
5 12 8.1e-06 0.00092 21.3 0.2 2 23 327 348 326 348 0.97
6 12 8.2e-07 9.3e-05 24.5 0.1 1 23 354 376 354 376 0.96
7 12 9.6e-05 0.011 17.9 2.2 1 23 382 404 382 404 0.97
8 12 0.00019 0.022 17.0 4.3 2 23 411 432 410 432 0.96
9 12 0.013 1.5 11.2 6.2 1 23 437 459 437 459 0.98
10 12 6e-06 0.00069 21.7 2.4 1 23 465 487 465 487 0.98
11 12 8.1e-06 0.00092 21.3 3.2 1 23 493 515 493 515 0.98
12 12 8.4e-06 0.00096 21.3 3.2 1 23 521 543 521 544 0.96

Sequence Information

Coding Sequence
atgaGTGTTTCCTATCAAGATTTTCCAAATATATGCCGGCTTTGCCTACATAATGGTGATTTACAACACTTTACTCAATTAGAAAAatggaatttatttaaaatgatcaCCAATATTGAGGTTACAGAAAATGATATGctaccaaaaaatgtatgcaAAATTTGTTTCAACCGCCTAGAAGatatttttctgtttatcaatAGGTGCAGAGATAATGACGcacttcttaaaaaaatatgtgaggaagttaaagaagaaaatgtaataaaaattgagaTACTTAACGACTCCGATCTCGACTCCGATAATAACTATGAGTACTACGACGTTGACCAAGTCGAAGAAACATTGAACAAATCTGAAGCAGCAAATAAAGAAAATACCAATTTTACGATTACTCCCTATAATGGACAAATCGGGCTTGAAGGAAACGAGTTCCTAAAACCAAAAGACTCTAAAATACAAAGCTGTTCTGTGTATGTGATTGATGTAAGTCCAGGCGGATTAAATAATGATGCAAAATGTAGACTAGACGACTATAGATGTCCGATATGtgagaaaatatttttcccAAAACGCAAATTAACGCTTCATCTAAAGTCACATCAGAGCGATCCCGAGAATGATCCCAAGAACGATCTCGAGAACGATCCCAAGAACGATACATCTTATGAGTGTCCAACGTGTTCTAAAAAGTTTTCAGTTGCTGAACATTTAAGAAGACATGCACTCTTGCATGAAGGAGTGAAGCCATTTATTTGCAATATATGCGAAAAAGgatttttaagaaaaaaatctttGATTGAACATATGGTTTCTCATACTGGTAAAATGCCGTACATATGTTCGTATTGCGGAAAAGGTTATAGGAGTCGTAGTACCCTTGATTATCACATTTATCACAATCACGATGtaactaaagaagaaacacCGAAACACAAAAGAAAATACGTTGAGAAAAGAGTACATTTAAACCTGCAATGCACAATTTGTGGTAAAATATTTGCTAGCAGGTCTGGTTTTGCCAACCATCAACTTAGTCACAAaggagtaaaaaaatttttgtgcaATATTTGCGGCAGAAATTTCATAACAAATGCAGCATTGGAAGCTCATATAAGAACTCACACTGGAGAAAAACCTTTCGAGTGTAAAGAGTGTGGCGAAAAATTTAGTCTAAGACAATCGCTAAACTTACATATGTCTCATCATACAACCGATAAGTCTCTAAACTGTCCCCATTGTGATAAAAGATGTTATTCAAAGAATAGCCTAACTATTCATATTTCAACACACTCTCGAGACAAATTCACATGTCCAGACTGCGACAAACAGTTCCTCCACAAACACGCATTCCACAATCACATTTTAAATCACAAATGTGATATATCTCACGAATGCAATATATGCGAAAAAAAATTTGCGCGCCAGTCCCATTTAGATGAACATGTGAGAATACATACTGGAGAGAAACCGTTTCGATGTACCAATTGTGGAAAACGGCTCACCAATCGGCGTACACTGAAAACACATATGAGACTGCATACTGGCGAAACACCTTACGAGTGTTCAGTTTGTCAGAAAGGTTACCGTGACGCTAGTAATTTAAGAAAGCATTTTAAACGGCATCACGTGCCTGATACTAAACTTGGGAAAACCGTCTTGAAGACAAATGATGATACTAGCAAGAGTCCAGtgatataa
Protein Sequence
MSVSYQDFPNICRLCLHNGDLQHFTQLEKWNLFKMITNIEVTENDMLPKNVCKICFNRLEDIFLFINRCRDNDALLKKICEEVKEENVIKIEILNDSDLDSDNNYEYYDVDQVEETLNKSEAANKENTNFTITPYNGQIGLEGNEFLKPKDSKIQSCSVYVIDVSPGGLNNDAKCRLDDYRCPICEKIFFPKRKLTLHLKSHQSDPENDPKNDLENDPKNDTSYECPTCSKKFSVAEHLRRHALLHEGVKPFICNICEKGFLRKKSLIEHMVSHTGKMPYICSYCGKGYRSRSTLDYHIYHNHDVTKEETPKHKRKYVEKRVHLNLQCTICGKIFASRSGFANHQLSHKGVKKFLCNICGRNFITNAALEAHIRTHTGEKPFECKECGEKFSLRQSLNLHMSHHTTDKSLNCPHCDKRCYSKNSLTIHISTHSRDKFTCPDCDKQFLHKHAFHNHILNHKCDISHECNICEKKFARQSHLDEHVRIHTGEKPFRCTNCGKRLTNRRTLKTHMRLHTGETPYECSVCQKGYRDASNLRKHFKRHHVPDTKLGKTVLKTNDDTSKSPVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-