Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796658.1:84179710-84181716[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.9e-06 0.00033 22.7 0.5 1 23 172 194 172 194 0.95

2 11 0.0028 0.32 13.3 0.1 1 23 228 251 228 251 0.95

3 11 0.0017 0.2 14.0 2.9 2 23 258 279 257 279 0.97

4 11 6.7e-07 7.6e-05 24.7 1.0 1 23 285 307 285 307 0.99

5 11 1.9e-06 0.00022 23.3 2.5 1 23 313 335 313 335 0.98

6 11 2.2e-05 0.0025 19.9 0.7 1 23 341 363 341 363 0.95

7 11 0.00025 0.028 16.6 0.7 3 23 371 391 369 391 0.96

8 11 1.1e-06 0.00013 24.0 2.1 1 23 397 419 397 419 0.98

9 11 0.00016 0.019 17.2 0.8 1 23 425 447 425 447 0.99

10 11 4.8e-06 0.00055 22.0 0.7 1 23 453 475 453 475 0.98

11 11 9.6e-07 0.00011 24.2 0.9 1 23 481 503 481 503 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.9e-06	0.00033	22.7	0.5	1	23	172	194	172	194	0.95
2	11	0.0028	0.32	13.3	0.1	1	23	228	251	228	251	0.95
3	11	0.0017	0.2	14.0	2.9	2	23	258	279	257	279	0.97
4	11	6.7e-07	7.6e-05	24.7	1.0	1	23	285	307	285	307	0.99
5	11	1.9e-06	0.00022	23.3	2.5	1	23	313	335	313	335	0.98
6	11	2.2e-05	0.0025	19.9	0.7	1	23	341	363	341	363	0.95
7	11	0.00025	0.028	16.6	0.7	3	23	371	391	369	391	0.96
8	11	1.1e-06	0.00013	24.0	2.1	1	23	397	419	397	419	0.98
9	11	0.00016	0.019	17.2	0.8	1	23	425	447	425	447	0.99
10	11	4.8e-06	0.00055	22.0	0.7	1	23	453	475	453	475	0.98
11	11	9.6e-07	0.00011	24.2	0.9	1	23	481	503	481	503	0.98

Sequence Information

Coding Sequence: ATGGAAGAATGTGAGCTGCGGAATATATGCAGGGCATGTTTAACAGAAGACGGTGAATTCCAATCAGTATTTGTACCTGAGAGTAGTACCGGTTTATCACTTCATTTATCCGAAATGATGAGTGCATGTGCATCTATACAgGTGACATTAGGGGATGGCTTGCCAGAACAAATTTGTACTTCATGTGCAACTAACActgtaaatatgtatttatttaaactaaaatgtgaaaaaagtgATACAATTCTTCGAGATAAACTACGAAAAGTCTCCGTTTACTATGAAGAAGAATTTTTGGAACAAACTAATAATGACGATGAAGAACTAATCAAACCTGAAATACACATAGAAAATGACagtaaaatatctcaaaatgaGACCATTTTAGAAGACTTTGATAATTTTGATTTCGAAACGTACAAAAGTGATAGTGAGGATTTTCCAGAACCCGTCGAAGAATCAGATATCGCAGATCATGGAATTGcgttaaaacaacaaaataaagtaaaagaATTTGAGTGTGATATATGCCAAAAGCGTTTTAGTCGCAATGATCTCCTAATAAGACATAAAATAGCTCATGCGATGAAAATGGATGAACAAAAAATTGAATTCGATGGTACATTTCAGATGGAAGAGAACACTCGCAGTCCCCTAATGATTAAAAGTGAAGAATTTATGTTTTCTTGTTCAGAATGTGATGTActatttattcaaaaagaaGATCTCGATAATCACATAAGCCAAGAGCATGAAAAGAAAGCAAATGTTAGTTGTGAGATTTGTTTAAAAAAGTTCCACAAAGTGGCACATTTAAATAGGCATATTAAGATACATTCTTcagtaaaaatgtataaatgtcCATTGTGCAACAAAGGGTTCATAAGAGAGGACCAACTGTCGCATCATATGAATATTCATTCAGGAGCTAAACCTCATACTTGTGATATTTGTTTTAAAGGTTTTAACCAGATATCTAACTTAAAAGACCATATGAGAACCCACAATGGGGAGAAACCATTTCTGTGCTCAACTTGCGGTAAGGGTTTCAACCAATTGGGAAATCTTAGGCAGCATACCATTAGACATAGCGGAGTTAAAGCACACCTTTGTAGTACATGTGGGAATGGTTTTGCTAGTAAAGGAGAATTATCTGCACATCTTAGAAAACATACAGGTGCAAGGCCTTTCGTTTGTTCAGTATGCGGACATGGTTTCACAACTTCTAGTTCCTTAACGAAACACAAGCGAATTCATTCTGGCGAGAAACCGTATGAGTGTGACGTGTgtaagatgaaattttcaagGTCGGGAATCTTGGCAAGGCACAAACGTACACATACTGGTGAAAAACCATACGTTTGTAAATTTTGTGCTAAAGCCTTCTCACAGTCTAATGATCTGACTTCTCACCTTCGAATTCATACCGGAGAAAAACCATATATTTGTGATCAGTGTGGTCAAGCTTTTAGACAAAGTTCCGCATTAAAAACACATAAAAAGACTCATATTGAGAAAGTGGCAATCCTGGATACaaaaccaataataattaacaatgttgctaattacctGACCACCTTTTAG
Protein Sequence: MEECELRNICRACLTEDGEFQSVFVPESSTGLSLHLSEMMSACASIQVTLGDGLPEQICTSCATNTVNMYLFKLKCEKSDTILRDKLRKVSVYYEEEFLEQTNNDDEELIKPEIHIENDSKISQNETILEDFDNFDFETYKSDSEDFPEPVEESDIADHGIALKQQNKVKEFECDICQKRFSRNDLLIRHKIAHAMKMDEQKIEFDGTFQMEENTRSPLMIKSEEFMFSCSECDVLFIQKEDLDNHISQEHEKKANVSCEICLKKFHKVAHLNRHIKIHSSVKMYKCPLCNKGFIREDQLSHHMNIHSGAKPHTCDICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGVKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCSVCGHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCAKAFSQSNDLTSHLRIHTGEKPYICDQCGQAFRQSSALKTHKKTHIEKVAILDTKPIIINNVANYLTTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01370067; iTF_01296738; iTF_00886703;
90% Identity: iTF_00886703; iTF_01370067;
80% Identity: -