Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796662.1:11857499-11862994[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.003 0.34 13.3 1.4 1 23 128 150 128 150 0.98

2 16 0.025 2.8 10.4 0.8 2 23 156 177 156 177 0.98

3 16 0.0054 0.62 12.4 6.5 1 21 183 203 183 205 0.93

4 16 1.2e-06 0.00014 23.9 1.2 1 23 211 233 211 233 0.98

5 16 0.0034 0.39 13.1 1.8 1 23 240 262 240 262 0.97

6 16 0.0042 0.48 12.8 0.5 2 23 269 290 268 290 0.95

7 16 0.0012 0.13 14.5 0.3 1 23 295 318 295 318 0.97

8 16 0.00035 0.04 16.2 1.2 2 23 322 343 321 343 0.97

9 16 6.9e-05 0.0078 18.4 0.8 2 23 350 372 349 372 0.96

10 16 6.8e-06 0.00077 21.6 2.3 2 23 380 401 379 401 0.98

11 16 1e-06 0.00012 24.1 1.8 1 23 405 427 405 427 0.97

12 16 6.8e-06 0.00077 21.6 4.4 1 23 433 455 433 455 0.98

13 16 0.0074 0.85 12.0 3.3 1 23 461 483 461 483 0.96

14 16 0.00052 0.059 15.7 2.1 1 23 489 511 489 511 0.98

15 16 7.6e-05 0.0087 18.3 3.6 1 22 517 538 517 541 0.91

16 16 0.0044 0.5 12.7 0.3 1 22 549 570 549 572 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.003	0.34	13.3	1.4	1	23	128	150	128	150	0.98
2	16	0.025	2.8	10.4	0.8	2	23	156	177	156	177	0.98
3	16	0.0054	0.62	12.4	6.5	1	21	183	203	183	205	0.93
4	16	1.2e-06	0.00014	23.9	1.2	1	23	211	233	211	233	0.98
5	16	0.0034	0.39	13.1	1.8	1	23	240	262	240	262	0.97
6	16	0.0042	0.48	12.8	0.5	2	23	269	290	268	290	0.95
7	16	0.0012	0.13	14.5	0.3	1	23	295	318	295	318	0.97
8	16	0.00035	0.04	16.2	1.2	2	23	322	343	321	343	0.97
9	16	6.9e-05	0.0078	18.4	0.8	2	23	350	372	349	372	0.96
10	16	6.8e-06	0.00077	21.6	2.3	2	23	380	401	379	401	0.98
11	16	1e-06	0.00012	24.1	1.8	1	23	405	427	405	427	0.97
12	16	6.8e-06	0.00077	21.6	4.4	1	23	433	455	433	455	0.98
13	16	0.0074	0.85	12.0	3.3	1	23	461	483	461	483	0.96
14	16	0.00052	0.059	15.7	2.1	1	23	489	511	489	511	0.98
15	16	7.6e-05	0.0087	18.3	3.6	1	22	517	538	517	541	0.91
16	16	0.0044	0.5	12.7	0.3	1	22	549	570	549	572	0.87

Sequence Information

Coding Sequence: ATGGCTCAAGGGATTATTCCAAAATCAGAAGTAGGAGTTAAAATGGAAACTGATTGTATGAAACAGTTTAATCCGGAACAGATCTATATTAAATCTGAAGCAGAAATACCTGAGAAGCTGTTTAAGGTTAAAAAGGAACCAGCAAGCAACCTTATAGATAGCGGTAATAATTCGACTATAGTTAAAATAGAGGTTGAAAATGAAGATGATAACGATGAACTCGAACTCGaaaaaatgttggtaaaagAAGAAATAGGTAGTGACTGTGACGAAAACTTTGAATTATCCCAATCAGACATTGAGAAGGAATTTGAAGCTTTCGATAACGAAGATGAAAAGACTAATAGCGGAGTGACCACTTTGGAAAATAATACCACTGCATATACATGTCAAATGTGTGAAGAAGTTTTCACAAAATTCCCTGATTATAAAGCCCATAAGAAACAACATTTTATAGAAAAGCGCAGatgCCCGGTGTGCAACATAGTATGTCAAAGCATTGGGAAACTGCAGGATCACTTGAACAAACATTTGGGTCTAAAGCCATTCGATTGCGACGAATGTGGCAAATCATTCATTTCTAAGCATCACGTAAAACTACATAAAAGATGTCACAACAAGGAGAAGTCATATCAGTGCACGAAATGCGAGAAAGCTTTTAGGAACAGGGGTTCATTAAGAAGCCATCAACTTGTGCATCAggagaaaattaaagaatttgtTTGCAAGacTTGCAATGAAGACTGTAAGAACCTTCCCGACTTCAGGAAGCACATGGAGGGGCACGGTACATGGACAGAAATAAAGTGCGGACTTTgcaataaaacatttaatagtGATCGGGGGTTAGAATATCACATAAGTTTCCATAAAGAACTAAAATTTCCCTGTGAATATTGTGGGCGAATATATCCCTCAATGTACAGGATAAAGAGACACATTAAGAGGGCGCATATCCCAAATCAATGTGACGAATGCAAGGAGgtttTCTATGATCGTGCATTGTTTACGAAACATAGAAAACAGCACAACGAAGGTAAACCAGTAGAATGCCAATATTGCCAGAAGAAATTTGACAAAGCAAAAAATTTAAGTGAACACATTAGGTTACAACACAAGCAAGATGGAACTATGAAGAAatgtcatatttgtgataaaGAATTCATTAACACAGCACTTTTGAAAAATCACATAAAGACTCATGACAAATGTTTCAAGTGCCCACATTGTGATAAAGTATTTGCTTCAAGGTATAATCTTGAAACACATTCCGTAACTCATTCTGGCGCAAGAGACCATAAGTGTCATATCTGCGAAAAGGGCTATTCTACAAAGAGCAGCCTGAAAAATCATCTAGCTACTCATAGTGAAGAAAGATCTTTCCAGTGTGATCAATGTGCAAAAACATTCAAAACAAACCGAAGACTTTATGTTCACAAATTCTCGCACGCAACAGAGGAGAAGTTTCAGTGTGAGATTTGCCTTCAAAAATTCAGGGTTAAACAGTACCTTAAATATCACATGATAAAGCACTCCACTGTCAAACCGTTTGAGTGTGCAATCTGCAAGAAACGCTTCAAGCATAAAAAATCATATGAAAAACACATGAATTTAGGCAGGCACAAGCAGAAAACCGAGCAAGAACACGACTGTGACTTTTGTGATGAGAGTTTTGCTACTCGAGATTTACTCGTAGATCATTTTGCTGAAGTGCATCACAAGGagaatgttataaataatataaatgaatGTGAAGgagcagaaaatgatatggacATGATGGAAAATGAGTGTGATAGCGCAGAGAATACTGTTGAAGCTTTCGATAATAGAAATATGGAAGtggaacaaatacaaactgatGTGAAAGTTAAGCTAGAAAAGGACGGCGATGTTCAAGTGAAATGTgaggtaaatgtttaa
Protein Sequence: MAQGIIPKSEVGVKMETDCMKQFNPEQIYIKSEAEIPEKLFKVKKEPASNLIDSGNNSTIVKIEVENEDDNDELELEKMLVKEEIGSDCDENFELSQSDIEKEFEAFDNEDEKTNSGVTTLENNTTAYTCQMCEEVFTKFPDYKAHKKQHFIEKRRCPVCNIVCQSIGKLQDHLNKHLGLKPFDCDECGKSFISKHHVKLHKRCHNKEKSYQCTKCEKAFRNRGSLRSHQLVHQEKIKEFVCKTCNEDCKNLPDFRKHMEGHGTWTEIKCGLCNKTFNSDRGLEYHISFHKELKFPCEYCGRIYPSMYRIKRHIKRAHIPNQCDECKEVFYDRALFTKHRKQHNEGKPVECQYCQKKFDKAKNLSEHIRLQHKQDGTMKKCHICDKEFINTALLKNHIKTHDKCFKCPHCDKVFASRYNLETHSVTHSGARDHKCHICEKGYSTKSSLKNHLATHSEERSFQCDQCAKTFKTNRRLYVHKFSHATEEKFQCEICLQKFRVKQYLKYHMIKHSTVKPFECAICKKRFKHKKSYEKHMNLGRHKQKTEQEHDCDFCDESFATRDLLVDHFAEVHHKENVINNINECEGAENDMDMMENECDSAENTVEAFDNRNMEVEQIQTDVKVKLEKDGDVQVKCEVNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -