Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796659.1:79247577-79249739[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.3e-05 0.011 18.0 1.3 2 23 163 184 162 184 0.97

2 16 1.6 1.9e+02 4.6 0.5 3 23 191 212 189 212 0.91

3 16 0.00048 0.055 15.7 0.8 3 23 227 248 225 248 0.93

4 16 0.00023 0.026 16.8 0.4 2 23 263 284 262 284 0.96

5 16 0.0062 0.7 12.3 3.5 1 23 290 312 290 312 0.98

6 16 0.00012 0.014 17.7 1.9 1 23 320 342 320 342 0.99

7 16 3.8e-07 4.3e-05 25.5 0.7 1 23 347 369 347 369 0.96

8 16 0.0024 0.28 13.5 4.9 1 23 375 397 375 397 0.98

9 16 0.00015 0.017 17.3 2.6 1 23 403 425 403 425 0.96

10 16 0.0013 0.15 14.4 3.1 1 23 431 453 431 453 0.97

11 16 5.8e-07 6.6e-05 24.9 1.1 3 23 461 481 459 481 0.96

12 16 1.2e-07 1.4e-05 27.0 0.1 2 23 487 508 486 508 0.97

13 16 0.00019 0.022 17.0 2.8 1 23 514 536 514 536 0.96

14 16 6.6e-06 0.00075 21.6 1.4 1 23 542 564 542 564 0.98

15 16 9.1e-05 0.01 18.0 2.7 1 23 570 592 570 592 0.98

16 16 3.8 4.3e+02 3.5 0.4 1 23 598 621 598 621 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.3e-05	0.011	18.0	1.3	2	23	163	184	162	184	0.97
2	16	1.6	1.9e+02	4.6	0.5	3	23	191	212	189	212	0.91
3	16	0.00048	0.055	15.7	0.8	3	23	227	248	225	248	0.93
4	16	0.00023	0.026	16.8	0.4	2	23	263	284	262	284	0.96
5	16	0.0062	0.7	12.3	3.5	1	23	290	312	290	312	0.98
6	16	0.00012	0.014	17.7	1.9	1	23	320	342	320	342	0.99
7	16	3.8e-07	4.3e-05	25.5	0.7	1	23	347	369	347	369	0.96
8	16	0.0024	0.28	13.5	4.9	1	23	375	397	375	397	0.98
9	16	0.00015	0.017	17.3	2.6	1	23	403	425	403	425	0.96
10	16	0.0013	0.15	14.4	3.1	1	23	431	453	431	453	0.97
11	16	5.8e-07	6.6e-05	24.9	1.1	3	23	461	481	459	481	0.96
12	16	1.2e-07	1.4e-05	27.0	0.1	2	23	487	508	486	508	0.97
13	16	0.00019	0.022	17.0	2.8	1	23	514	536	514	536	0.96
14	16	6.6e-06	0.00075	21.6	1.4	1	23	542	564	542	564	0.98
15	16	9.1e-05	0.01	18.0	2.7	1	23	570	592	570	592	0.98
16	16	3.8	4.3e+02	3.5	0.4	1	23	598	621	598	621	0.93

Sequence Information

Coding Sequence: ATGAACGAGTcgataaatattttccaaaaatctgACACAGATATAAGTAAAATTTGTAGAATATGTATGAATACCCTTTTAAATAATGGTATTGCAATATTTGAGGCAGTGGAGGAACATAAATACAACTTGGCTAATAAAATTATGGCTTGCGCTTCTGTACAGGTTGTTGATGGAGATGGCTTACCATCGTCTATTTGCCAGAGCTGCTGTGAATTATTGAGGActgcttttttattaaaaaagcaaTGTGAAGAATCGGATGTAGCTCTTCGttattatttatcaaattctAGTCAAATATCGAATAAAAATACACAGCTTGGGAAGTCTTGTTTTGATTCGAATAATATAGATTCTACAGATAATAGTTTCTACCCCGAAAATTCTGATAATGGTAGCGATAGCGAAGATTTTcccaaagaaaaaaatgtatttgacaAATCTTCTACAACTGCTGTTATTTGTACAtcaaaaaaagtattaaaatgtGATATTTGTACAAGCAGTTTTAAGAAATTGAACCAGCTAAAATTACATATGCGCATACATAGAAGGAAAACGTCAAACTGCAAAATTTGTTTAGAAAAATTGAATTCTCTGTATGAATTATCTCAACACAATAAAGCATACCACGGAAAGACTATCAAGATAAAAACTGAGGAAACCACGCACCTATGTTCAGTATGTGAGGAAAAGTTTTCAGATAATAAGTCTTTAATAGACCACATGCTTTTAAATCACACAGAAAAAAGAATAAACATATCCGACGTATCAAACCAGTTAATTTGTAGTATTTGcaacaaaacttatttaaataacaGAAACTTGACAGCTCACATGGGCACGCACACAGGAAATAAGCCTTTCGAGTGTAGCGTTTGCAAAAAAAGATTTACGCAGGGTAGAGCTTTCGCGTGTCACATGAGAACCCACTCTGATGAAATCGAAAAGCCCTACAAATGTGATAAATGTCACAATGCGTTTGCGAAAGAAGAGCAGTTGACTATTCATATTAAGAAACATAGTGGAAAGGCACATATTTGTAGTATTTGTGGGAAAAGCTATAGCAATTCTGgaaATTTGAATGGCCACATGCGTTTACATACTGGAGATAAGCCGTACACGTGCCATATCTGTGGACGAAAATTTGCCCAAAGTAATGCCCATTCTTACCATATGAAAACCCACTTTGGAGATAAACCATTTTCTTGCGATTGCTGCCCAAAATCTTTCACCACTAATGGACAACTTATTAATCATCGTAGGTTACATACCGGTGAGAAGCCATTTGCCTGTACCTTGTGTCCAAAGAAATTTACCCAAAAGTTCGCCTGTACTATCCACATGATGACTCACACTGGAGACAAGCCTCATTTGTGCAGCATTTGTGGCAAGAAATACTCTCAAAGTAGCCAACTAGCCGAACACATGAGAGTGCACAACGGTGAAACACTGCAATGCAGTATTTGTGGCAAAGCGTACACAACCACCGGTAACCTTGCGGCTCATATGCGCACACACACCGGCATAAAACCCCACGCGTGTGATATATGCCACAAAGCCTTCTACGTTCCCAATAAACTGGCTAAACATAAACGCACCCACACTGGAGACAGACCATACAACTGTAATGAGTGTTCTAAAAAATTTGTGTCCTTAGAATCACTGAAGATCCATACCAGAACTCACTCTGGGGAACGTCCTTATGCCTGCCAATATTGTAGTAAGAGTTTTATCAGTGGTTCTCATCGTACCGCTCATATGAAGACTCATGGCGAAATGAAATCGTACATCTGTGGAATGTGTTGTGGAGCTTTTGGTAGTGCTTCGGAAATGGCGGTGCACCAAGCAACATGCCATAAAACAAATAGAGACGTTTATACAAATTTAACGGGGGAATATGTCTAA
Protein Sequence: MNESINIFQKSDTDISKICRICMNTLLNNGIAIFEAVEEHKYNLANKIMACASVQVVDGDGLPSSICQSCCELLRTAFLLKKQCEESDVALRYYLSNSSQISNKNTQLGKSCFDSNNIDSTDNSFYPENSDNGSDSEDFPKEKNVFDKSSTTAVICTSKKVLKCDICTSSFKKLNQLKLHMRIHRRKTSNCKICLEKLNSLYELSQHNKAYHGKTIKIKTEETTHLCSVCEEKFSDNKSLIDHMLLNHTEKRINISDVSNQLICSICNKTYLNNRNLTAHMGTHTGNKPFECSVCKKRFTQGRAFACHMRTHSDEIEKPYKCDKCHNAFAKEEQLTIHIKKHSGKAHICSICGKSYSNSGNLNGHMRLHTGDKPYTCHICGRKFAQSNAHSYHMKTHFGDKPFSCDCCPKSFTTNGQLINHRRLHTGEKPFACTLCPKKFTQKFACTIHMMTHTGDKPHLCSICGKKYSQSSQLAEHMRVHNGETLQCSICGKAYTTTGNLAAHMRTHTGIKPHACDICHKAFYVPNKLAKHKRTHTGDRPYNCNECSKKFVSLESLKIHTRTHSGERPYACQYCSKSFISGSHRTAHMKTHGEMKSYICGMCCGAFGSASEMAVHQATCHKTNRDVYTNLTGEYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296707;
90% Identity: -
80% Identity: -