Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796661.1:29040323-29060250[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.3e-06 0.00026 23.0 2.0 1 23 229 251 229 251 0.98

2 12 0.00028 0.032 16.5 0.3 2 23 256 277 255 277 0.97

3 12 4.5e-07 5.2e-05 25.3 2.2 1 23 283 305 283 305 0.99

4 12 5.6e-05 0.0064 18.7 4.7 3 23 313 333 311 333 0.96

5 12 9.9e-06 0.0011 21.1 1.0 2 23 340 361 339 361 0.96

6 12 0.00016 0.018 17.2 5.1 1 23 367 389 367 389 0.98

7 12 1.6e-06 0.00019 23.5 0.5 1 23 395 417 395 417 0.99

8 12 2.3e-06 0.00026 23.0 1.8 1 23 423 445 423 445 0.99

9 12 4.5e-05 0.0052 19.0 0.0 1 23 451 473 451 473 0.99

10 12 2.1e-05 0.0024 20.0 2.6 1 23 479 501 479 501 0.98

11 12 0.00041 0.046 16.0 1.3 2 23 508 529 507 529 0.97

12 12 2.2e-06 0.00025 23.1 0.3 1 23 535 557 535 557 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.3e-06	0.00026	23.0	2.0	1	23	229	251	229	251	0.98
2	12	0.00028	0.032	16.5	0.3	2	23	256	277	255	277	0.97
3	12	4.5e-07	5.2e-05	25.3	2.2	1	23	283	305	283	305	0.99
4	12	5.6e-05	0.0064	18.7	4.7	3	23	313	333	311	333	0.96
5	12	9.9e-06	0.0011	21.1	1.0	2	23	340	361	339	361	0.96
6	12	0.00016	0.018	17.2	5.1	1	23	367	389	367	389	0.98
7	12	1.6e-06	0.00019	23.5	0.5	1	23	395	417	395	417	0.99
8	12	2.3e-06	0.00026	23.0	1.8	1	23	423	445	423	445	0.99
9	12	4.5e-05	0.0052	19.0	0.0	1	23	451	473	451	473	0.99
10	12	2.1e-05	0.0024	20.0	2.6	1	23	479	501	479	501	0.98
11	12	0.00041	0.046	16.0	1.3	2	23	508	529	507	529	0.97
12	12	2.2e-06	0.00025	23.1	0.3	1	23	535	557	535	557	0.98

Sequence Information

Coding Sequence: ATGACCGACAATGTGAAGATAATAACATGTTTAGAAAGACTTTGTCGGACGTGTTTATCTGAAAAGAATAGGGAAGAATTGCGGTCACTGTTTGAGGATTCTCTAGAAATTCAACTTACAGAAATTACATCTGTaaagGTAGAACCCAACGATGGTTTGCCAAATAATATATGTAACGCTTGTTATTACACGTTGAATGTAgccttgaattttaaaaatcagtgtcaaaagtcTGAATCTCAGTTACGAAATGCTTTATGTCCCGGACAGACAATAATATATAGGTCTATTACGATATTAGGAAACAACTCTGATGACTTACAAATAgagaattttgaagaaattgaaTCTGATTTACCGCTGTTAAAGGATAATTGTGAAATAAATAGTACATCGGTATTGACAGAAACTATAGAAATCACAAACAATTATAACGGGAAAATCGAATCTGAAACTATCTATTTAAAAACGGAAGGTAACCCCGACAAACTGAAATATATTGCTCCAGAGAACGATTTTGAAAATAGGCATGTGAATGATGAACATTCTGACAATGGACGTTCTGAAAACAACATTAACTCAAAGAGTCATGTAGTAACAGACCAATGTGAACTAACTGCATGTAATACGGCAGGTGCTAGTGTTGTAAATCCAAAGTTAGATCATTTAGAAAATTTGGTTCCATATACCTGTAAACAATGCGGAAAGACATTTAGGTTTGAGAGCGGTTTGAAAACGCACTTGATTAAACATGGAACAAAATTACAGTGTGAAGTATGTGGTCAGGAATTTAATATCTTAAAATATTTCAACGCCCATTTAAGAACTCATCCTGATTATAGACCATATAAATGCAAAATATGTAGTAAAACTTTCTCTGTTTCGACTAGTCTTGGAAAGCATATGAGAACGCATGGTGGGGAAAAGAAACATCTATGTACAATTTGCGGAAAAAGGTTTTATGAGCAGAATCATCTtactattcataCTCGTACACATACAGGAGAAAAACCCATAGTTTGTAGTATTTGCGGAAAAAGATTTTCAGATTCACATGGTTTAACAACacataataaaatacatacaggAGAGAGAAAACATGAATGCAATTTCTGTGGAAAGAGATTCGCTCATTCCTTTGTACTTAAAGCTCATAAAAGGACGCATACTGGTGAAAAGCCTTATCGTTGCAGCATGTGTGATGCTGCGTTTGCAACTTCATCTTATCTGACAATTCACACACGAACTCACACTCAGGAAAGGCCCTACAAATGCGAGACATGTCCGAagTCATTCATCAGCAAATGTGCCTTAGCTGCTCATTATAGAACTCATACTGGTGAAAAGAAGTTCCAGTGCGCGCTTTGTGGGAAAAGAGCAGGACGTGCTGCCGATCTACAGATTCACATGAGATCTCATACTGGTGAAAAGCCATACGCCTGCGACCAATGCCCGAAACGATATCACACCTCAAGCAACTTAGCCACACATAAGAGAACACACTCTGGTATAAAGGATCAGGTTTGTACAGTTTGTGGAAAAGCATTTGGAGACCCTCGTACCCTAAAATGCCATTACAGAACACACACCGGTGAAAAACCTTACGTGTGTAGACTTTGTGGAAAGAGTTATACGCAGTCTGGACAATTAGCAGCACATCGAAAGATTCATGTATTAACAAATCCAAGTTAG
Protein Sequence: MTDNVKIITCLERLCRTCLSEKNREELRSLFEDSLEIQLTEITSVKVEPNDGLPNNICNACYYTLNVALNFKNQCQKSESQLRNALCPGQTIIYRSITILGNNSDDLQIENFEEIESDLPLLKDNCEINSTSVLTETIEITNNYNGKIESETIYLKTEGNPDKLKYIAPENDFENRHVNDEHSDNGRSENNINSKSHVVTDQCELTACNTAGASVVNPKLDHLENLVPYTCKQCGKTFRFESGLKTHLIKHGTKLQCEVCGQEFNILKYFNAHLRTHPDYRPYKCKICSKTFSVSTSLGKHMRTHGGEKKHLCTICGKRFYEQNHLTIHTRTHTGEKPIVCSICGKRFSDSHGLTTHNKIHTGERKHECNFCGKRFAHSFVLKAHKRTHTGEKPYRCSMCDAAFATSSYLTIHTRTHTQERPYKCETCPKSFISKCALAAHYRTHTGEKKFQCALCGKRAGRAADLQIHMRSHTGEKPYACDQCPKRYHTSSNLATHKRTHSGIKDQVCTVCGKAFGDPRTLKCHYRTHTGEKPYVCRLCGKSYTQSGQLAAHRKIHVLTNPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296708;
90% Identity: -
80% Identity: -