Rmor036896.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
ZNF236
Assembly
GCA_963680705.1
Location
OY796661.1:25318230-25338204[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1.7 1.9e+02 4.6 0.6 1 23 128 150 128 150 0.96
2 25 0.027 3.1 10.2 0.4 1 23 156 179 156 179 0.93
3 25 0.095 11 8.5 0.1 2 23 186 209 186 209 0.96
4 25 0.00084 0.095 15.0 0.2 1 23 215 237 215 237 0.99
5 25 0.087 9.8 8.7 0.2 2 23 249 270 248 270 0.94
6 25 5.9e-05 0.0068 18.6 3.3 1 23 294 316 294 316 0.97
7 25 1.6e-05 0.0019 20.4 1.1 1 23 322 344 322 344 0.98
8 25 4.8e-05 0.0055 18.9 0.6 1 23 350 373 350 373 0.97
9 25 0.24 27 7.3 2.0 1 23 383 406 383 406 0.95
10 25 1.3e-06 0.00015 23.8 1.9 1 23 501 523 501 523 0.98
11 25 8.1e-06 0.00093 21.3 2.6 1 23 529 551 529 551 0.99
12 25 0.0032 0.36 13.2 0.8 1 23 557 579 557 579 0.99
13 25 3e-05 0.0034 19.6 3.2 1 23 659 681 659 681 0.97
14 25 0.00022 0.026 16.8 1.5 1 23 687 709 687 709 0.98
15 25 2.7e-05 0.003 19.7 0.2 3 23 717 737 716 737 0.98
16 25 0.0056 0.63 12.4 2.4 1 23 743 766 743 766 0.93
17 25 1.6 1.8e+02 4.7 5.0 1 23 1104 1126 1104 1126 0.96
18 25 2.4 2.8e+02 4.1 0.1 1 23 1132 1154 1132 1154 0.94
19 25 6.3e-06 0.00071 21.7 3.1 2 23 1164 1185 1164 1185 0.98
20 25 6.5e-05 0.0074 18.5 3.0 3 23 1193 1213 1191 1213 0.98
21 25 0.0016 0.18 14.1 0.9 3 23 1222 1242 1220 1242 0.97
22 25 0.09 10 8.6 1.1 2 23 1249 1271 1248 1271 0.90
23 25 0.021 2.4 10.6 2.3 1 23 1423 1446 1423 1446 0.96
24 25 0.0069 0.79 12.1 0.2 1 23 1452 1474 1452 1474 0.94
25 25 0.076 8.6 8.8 1.2 1 22 1480 1501 1480 1501 0.95

Sequence Information

Coding Sequence
ATGTTAGCCAACAGCCAGTTGTTTAGTTCCAGTAACGAAAAGAATTCATTAACATATGTGGCTATTCCACTAGATTCCTTGAAGAATCCTGGAGAACATGGAGACTTGAAAGTTATACAAAACATTGTTCTCAAGCAACTGGCGGATGGGTCGATATGTTTAGTAGAAGATGAGgaaaaacaaaatttcaacgATAAGCAATATCCTTTAACATTTACTACTACAACGTCCAATGTGAATACTGACAATCCCCAGATTCCCCAGAGAATACTAGCAAGAAAACGTACTATAATACTGCAGCGTCCAAAGTCAAACCAGGATCGCCTTCCATTAGAAAGTAAACCCCCAAAAAAGCTTCTTCCAAAAATACTTGATCAGAAATTTAAATGCATAaaatgtgacattttgtttgaaaCGCTTCTTCTTTACCGAGATCACATGAAGTGGCATAGATGTcagaaaaaattcaaatgtCCAAAATGTTTTACTGGCTACAATATAGAAAACAACCTGAAAATTCACATGGTGCTTATGCATTCGGAAGAAAACAACGCACAATGTCCCATTTGTGATGTTAATTTAACATTCCAAAGAGCTGCTAGTTTGAGGTCACATTTGATATTGCATCAAGTGGAAGAGTTCTATACATGTGATGAATGCAATGGAGAATTTGATAAAGAGGATGATTTTATTAAGCATATGGAAACGCATGCcactagaaaaaaatataaagaaacacCTCTGACGTGTTCTTATTGCAAAGTTGAATTCCAAGATATCAAAGAACTTAGAGCCCACGTGTCAGATCATGTAAAATTAAAGAAGACGTTCACGAAGCCTAAAAGACCACGAAAACCAGGGTCGAAAAAGGATACCAACCATGTATGTACCGTATGTAATAAGAGTTTTATCAAACATTCTTTGTTGGAGAGACATGAACGGATTCACAGTGGGGAGAGACCTTATAAGtgtGAATTTTGTGATCGAGGCTTCACCCAAAAGGGAACATTACAGATACATTTAAGCAGACATACTGGCATTAAACCATTTTCCTGTACTTTATGTCCAGCTAAATTTAACCAAAAAGgtAATTTACGAGTGCACATACAAAAAACACATACATTTCCAAATGAAGGCCAAAAGATGTATAAATGCTCTCAGTGTACTTGCATTTTCAAAAAGATTGCCACTTTAAACGGCCATGTGACCAAAGCACATCTCAACAACAAAGACTCGCCTGAGATGCACGATAATTTAATTGACGAAGTTATGCTGAAGTTAAAGGAATTACAAAAGCAGACATCTTCTAATCCTTCTGAGTtagaaaaaacagataaaaataaggaaaatgAACCAAAGGAGGGTGTAATTGTTGAGAATAATTTAAGAGAAATTTCCGATGTTCAAAAGCCAAATTTTGTCCACTTGAGTGAATCAGTTAATGACGGTACAGTTAGGAAATATTTCGTTAGGCAGAAAAAAATTGGTGATACGCGATGGTATTTCTGTAACTACTGTTCCAAGCAATTCAAGAAACCTTCAGACTTAATGAGACACATCAGGGTGCATACAAGAGAAAAGCCGTTTAAGTGCAAACAATGCAAGACAGCATTCTCACTGAAATCGACGCTAATCTCTCATATGAGAACCCATAAAAACAAATTAGATTATAGATGTAAAATATGCAATTCTTCGTTTGTTTCTCTCAGAATATTAAATGCACATCTCAGaaAACACGATTTTGATTCGCTTCCAAAATGGCAGTGTATCACTTGCGGATATTTATTTGATGAATTAGAAAAAGGATATAAGCATAGAGAAGAAAAAGGCCGGGAGAAGGCGCATGTTATACAGCCTttcatacataatatattaaaacagCCTTTGTATCAAACAACTTATGGGTCCTTATCTTTCAAACCTCCAAAAACAAGATTTCCAAATACCGGTACAGAATCTCCCACCACCAGACCTTTCCATTGCACCATCTGCGATGCTAGGTTTACTAgaagaattaatttgaaaaggCATATTCAGTATCACAATGGAGAGAGGAAGTTTGAATGTTACATGTGCCCTAAGACTTTCATAACATCTTACAGATTAAAGGAACATCTTAATTACCACAACAACATAAAGAATCATGGTTGTACAGTGTGTGGCAAGAGATTTGTCACAGCAACTCTATTGAAAAGGCACCTCATTATCCACAATACTCTTAAACCATACCAGTGCCCGTATTGTACAAAAACATTCAAAACACTACTTTTGTGCAGGGCACACATAAATCAAGTACATAAAAAGGATGTAGTTCCAAAGtttGTCCCAGAATCAACTGAACCTATTCTAGGAACCTTCATTGATAGTAACAATGTGCAATCTACCACTGAATTTGTTCCTGACCAAAGTTCTAACAATACACTAAATACTTTACAGGAAGTGCAAGAAAATAACGAATCTGAGGAACTACCAGTAAATCCAGAAAATCTTGACATCCCACGGTTTCTTACAGCACCTTCAAACTCCatacaaattataaatacaAATGTTGGTGATCAGGATCCAAACAGTTTCCAAACGATTTACGTGAACATGGATGATCTACCGTTCCTTAACAACTCGAATATGAACTTAAATACATCACTTCAAACACAGTTAAAATTACAAAGTGCAGATTCACTGCTCATAAATCCAATGAATGATTTGCAAGACAACATCATGTTCAACATTGATTCATTAAAGCCTGAATTAGACTTGCCTCCCGACGAAATCTTCAGCAATGAAAATATTGATGTCTCGACTGCCAACACCACTCTACCTAGCATTGCTGAAATTTCAACCAAAACGATAAAATTGAATAGTTTTTCGGACAAAAACCTCAGCGAAAAAGATGGTTTAAACGAGTTATTGGACGCTAACTCTAGTCTATACTCAAACGTCACTTTTGCTGAAGGGCTAAGTTTACCAATCAGCGTTTCAGATAGTTCGAACGTTTTTAACACCAACACTCCAACAACCATCTTCCAGCCTATGTCTGCAGACCTGAATAATACTGCAGATATTTATGAATCGACTAATATTATGTGCATAACTTGTAGCAGATTGTTCACCACCCTAGAGGATTTTCAAAATCACCCCTGCGACTTATTGACAGATGAAGATGTTGCAACTGAAGCTGTTGCAACTGAAGCTGTTACAGCTGAGGCTGTTGAAGCTGCAAATCTAGAGAAACCGGAACTGATTTTGAATAATGATGAAAGTAGTGATAGCGCTAATAACCCTGAAACTGAAGAAACTATAAAAGAAGCCTTTGAATGCCAtatatgcaaaaaaatgttAGCCAACAAATTCTCTCATTACAGGCACGTGATGAGTCACGAGACTAAACCGACATATGAATGCGGCGTCTGTCAGAAAGTCATACAGGGCAGGAATGTTTACGTTAAGCATTTAGCCACTCATACTGGAACAAGCGGAAGTTTGTTGAGAACTTgtaaatattgctttaaagaCTTCAAGAAACCCTCGGATTTGAAAAGGCACCTTCGAACACACACTGGCGAAAAACCATTTGGCTGTCATCTCTGTGATAAGAAATTCTCTTTGAAATCAACCCTAGAATCTCACATAAAAACACACGATCCTAATCCTAAACAATTCGGTTGTGACATTTGTAATTCATTTTTCTCGTCAAAGTCAAGTCTGAAAGTCCATACAACTATTCATACTGGTCAGAGGACTCAGTCTTGCTCATTCTGTAACCAGAAATTTAGGACGGCAGGTAACAGGAAATCCCATGAAATTCTAATGCACTTATCTAAGTCCAGGAAACGTGGTGCAAGCAAGCGCACTAAAATTACGAATGTGTTAGAGACCATAGCATCTGAAGGATTAAACAATGTAAATGACGCACAATTGGACAATACCATCTCTGTAAACACTAGTGGAATTACATCAACAGAGGATGGTTcaaatACAAATTCCGAAGTACTTCCATCCCAATTAATTAACCTCTCAGAGAACCTGTTGCCAAATTTGCCCGAAGATCAAATCTCCATAGACCCAGTGATGCTGCTTCAACAGTTGCAGATGTCTGGGATGATTTTAACCAACGACAACAACGAACCTGTCTCGTCCCTGATATTAGACGATGTTACACTTTTAGACGTTGGAAGTGTCAAagataatattatttctttgcCCCCAGTGCAAAGTAATGTACCCGttagtgaaaatatttttgtgaaatttgaCAGACCTAAAACTTTCGAATGTGATATTTGCCACAAAATGTACGCTTCTAGGCAAATATTAAGAAAGCATAGAACGAAGATACATGGCGTGAATAAGAAGTATCCTTGTATCAAATGCGACAATGGATTTGATACACAAGACGAACTAAGTAGACATATAAAGTTGCATGCTGGGTATCGGCCGTTTTCATGCTTGTATTGTGCAAATAGCTTTACGGAGGAACACAGCTTGAAGACTCACATAAAAAGGTAA
Protein Sequence
MLANSQLFSSSNEKNSLTYVAIPLDSLKNPGEHGDLKVIQNIVLKQLADGSICLVEDEEKQNFNDKQYPLTFTTTTSNVNTDNPQIPQRILARKRTIILQRPKSNQDRLPLESKPPKKLLPKILDQKFKCIKCDILFETLLLYRDHMKWHRCQKKFKCPKCFTGYNIENNLKIHMVLMHSEENNAQCPICDVNLTFQRAASLRSHLILHQVEEFYTCDECNGEFDKEDDFIKHMETHATRKKYKETPLTCSYCKVEFQDIKELRAHVSDHVKLKKTFTKPKRPRKPGSKKDTNHVCTVCNKSFIKHSLLERHERIHSGERPYKCEFCDRGFTQKGTLQIHLSRHTGIKPFSCTLCPAKFNQKGNLRVHIQKTHTFPNEGQKMYKCSQCTCIFKKIATLNGHVTKAHLNNKDSPEMHDNLIDEVMLKLKELQKQTSSNPSELEKTDKNKENEPKEGVIVENNLREISDVQKPNFVHLSESVNDGTVRKYFVRQKKIGDTRWYFCNYCSKQFKKPSDLMRHIRVHTREKPFKCKQCKTAFSLKSTLISHMRTHKNKLDYRCKICNSSFVSLRILNAHLRKHDFDSLPKWQCITCGYLFDELEKGYKHREEKGREKAHVIQPFIHNILKQPLYQTTYGSLSFKPPKTRFPNTGTESPTTRPFHCTICDARFTRRINLKRHIQYHNGERKFECYMCPKTFITSYRLKEHLNYHNNIKNHGCTVCGKRFVTATLLKRHLIIHNTLKPYQCPYCTKTFKTLLLCRAHINQVHKKDVVPKFVPESTEPILGTFIDSNNVQSTTEFVPDQSSNNTLNTLQEVQENNESEELPVNPENLDIPRFLTAPSNSIQIINTNVGDQDPNSFQTIYVNMDDLPFLNNSNMNLNTSLQTQLKLQSADSLLINPMNDLQDNIMFNIDSLKPELDLPPDEIFSNENIDVSTANTTLPSIAEISTKTIKLNSFSDKNLSEKDGLNELLDANSSLYSNVTFAEGLSLPISVSDSSNVFNTNTPTTIFQPMSADLNNTADIYESTNIMCITCSRLFTTLEDFQNHPCDLLTDEDVATEAVATEAVTAEAVEAANLEKPELILNNDESSDSANNPETEETIKEAFECHICKKMLANKFSHYRHVMSHETKPTYECGVCQKVIQGRNVYVKHLATHTGTSGSLLRTCKYCFKDFKKPSDLKRHLRTHTGEKPFGCHLCDKKFSLKSTLESHIKTHDPNPKQFGCDICNSFFSSKSSLKVHTTIHTGQRTQSCSFCNQKFRTAGNRKSHEILMHLSKSRKRGASKRTKITNVLETIASEGLNNVNDAQLDNTISVNTSGITSTEDGSNTNSEVLPSQLINLSENLLPNLPEDQISIDPVMLLQQLQMSGMILTNDNNEPVSSLILDDVTLLDVGSVKDNIISLPPVQSNVPVSENIFVKFDRPKTFECDICHKMYASRQILRKHRTKIHGVNKKYPCIKCDNGFDTQDELSRHIKLHAGYRPFSCLYCANSFTEEHSLKTHIKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-