Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796658.1:17638510-17644788[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0015 0.17 14.2 4.6 1 23 146 168 146 168 0.97

2 16 0.011 1.2 11.5 2.5 3 23 176 196 175 196 0.96

3 16 0.00018 0.021 17.1 0.7 1 23 203 225 203 225 0.96

4 16 0.00035 0.04 16.2 0.7 1 23 316 338 316 338 0.99

5 16 8.5e-07 9.6e-05 24.4 6.4 3 23 346 366 345 366 0.98

6 16 0.00083 0.095 15.0 2.9 2 23 390 412 389 412 0.96

7 16 1.7e-05 0.002 20.3 1.7 3 23 496 516 494 516 0.96

8 16 0.00025 0.029 16.6 0.7 1 23 522 545 522 545 0.93

9 16 2.9e-06 0.00033 22.7 0.8 1 23 550 572 550 572 0.98

10 16 1.9e-05 0.0022 20.2 0.6 2 23 583 604 582 604 0.97

11 16 4.6e-07 5.2e-05 25.2 0.9 1 23 611 633 611 633 0.97

12 16 5.3e-05 0.006 18.8 1.6 3 23 645 665 643 665 0.92

13 16 0.00017 0.019 17.2 4.6 1 23 671 693 671 693 0.99

14 16 7.3e-05 0.0083 18.3 1.7 1 23 699 721 699 721 0.96

15 16 1.6e-07 1.8e-05 26.7 0.4 1 23 727 749 727 749 0.99

16 16 0.00025 0.029 16.6 0.1 1 23 755 779 755 779 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0015	0.17	14.2	4.6	1	23	146	168	146	168	0.97
2	16	0.011	1.2	11.5	2.5	3	23	176	196	175	196	0.96
3	16	0.00018	0.021	17.1	0.7	1	23	203	225	203	225	0.96
4	16	0.00035	0.04	16.2	0.7	1	23	316	338	316	338	0.99
5	16	8.5e-07	9.6e-05	24.4	6.4	3	23	346	366	345	366	0.98
6	16	0.00083	0.095	15.0	2.9	2	23	390	412	389	412	0.96
7	16	1.7e-05	0.002	20.3	1.7	3	23	496	516	494	516	0.96
8	16	0.00025	0.029	16.6	0.7	1	23	522	545	522	545	0.93
9	16	2.9e-06	0.00033	22.7	0.8	1	23	550	572	550	572	0.98
10	16	1.9e-05	0.0022	20.2	0.6	2	23	583	604	582	604	0.97
11	16	4.6e-07	5.2e-05	25.2	0.9	1	23	611	633	611	633	0.97
12	16	5.3e-05	0.006	18.8	1.6	3	23	645	665	643	665	0.92
13	16	0.00017	0.019	17.2	4.6	1	23	671	693	671	693	0.99
14	16	7.3e-05	0.0083	18.3	1.7	1	23	699	721	699	721	0.96
15	16	1.6e-07	1.8e-05	26.7	0.4	1	23	727	749	727	749	0.99
16	16	0.00025	0.029	16.6	0.1	1	23	755	779	755	779	0.93

Sequence Information

Coding Sequence: ATGATTACTAaagaaattgaattaataatagATAAGATCTGTCGCTGTTGCATGTGCGAAAATGAAAACATGCACAATGTATTTGAGAATAAAAAAGATGCAGAAGGCTCCTCCTCAATGCATCTTTCAGAAATGTTGATAGCTTGTGCCTCTGTAGAGgTGGTATTCGGAGATGGGTTACCATACAACTTATGTGACTCTTGTGAAAGCAAATTAAATACAGCATATGAGTTCAGACAACAATGCAAAAAAACCGATTCAGCTCTTAGAGAATTAATAAACACTGAAACAAAGgataacataacaaaacaagaaGATATTGTAATACAACCAGATGTTCCTGATGATTACTTTGATGAAGAAGATGACTTACCGCTGCTTAAACGTGGTATGAAACGTAAACGAGGAAGACCAAAGAAAAGAGATGGTGACAATTTTGCTTGTACATATTGTCATAAAGTATTACACACAAAAAAAGGACTACGTGTGCACTTAAGGTCACATACAGGAGAAAAAATGAGATACTGTTTATTTTGCAATGCAAAATATACTCGTACAAATCATCTAATTCGCCATATGGGCACTCATGATAAACCTGGGTTAACACATCCGtgtgaaaattgtgataaaacctTCACTGCCGCAGCCGATTTGTTTAAGCATTCTAGAGAACATGAGGAAATTGATGGCAAGAATCGTAATATTAAacaagaagatgaagaagaaatCAAGCCGGACTTGAATCCTGCCGGagagaatattaaattaaatgaaaataatttagatgatGTGGAGCATATTGATGATAATTTTGCTAACGATTTTCCATTTAGTGATGGTGGTGAGGATAATCAAATTGAAAGCGATGAAGATTTCATTATGAacatcaaaaaagaaaaaaaagacaTTAAAAAGAAGAAACCTGAGGATAAAGATAAAGCCTTATATGAGTGTAAAGAGTGTACTAAAGTTATGACTACGTATATAGGGTTGAAAATTCATATGAGGAGACACACCGGAGCCGATCTATCATTTTGTAAAttgtgtaataaatcaTTCACAAAACAGAGCCATTTAAACCGGCATATGCGAACACATGGAATTATAGATACAGAGAAACTGAAATCATTTAAACAGTCTACAGATGCCAAAGGAAAAAGGGTTATGGAATGCGATTTTTGTGATCGTAagtttaaatatagaaaaagtTTTGTACATCACATGCAAGTGGAGCATGGTATGTCGGACACAGAGAGTGATTTTGCAAATACTGAGGATGGTGCAGTTAACGATAAATcagaattaaatatatctagAGAGGATACAGATGAACTGGAAGGGGTCGTCgatcaaaataaattactagAACTAAAATCTGAGATCAACAATGATGTTGAATTAGACCAACCTGTAGTTGATGAAGATGATGGTGTACCAGACGCAGAAAATGTGGTAGTGAAAAAAGTTAGAAGCAAAAACCAAATTTGTCATGTATGTGGAGCCAGTTTTGCTAGAGCTAATCATCTCACTAGACATATGACTTTGCATAGAGCAGTTCTAGTGCATCAGTGTGATCGATGTGAAAAAGCCTTTGCTACCGAAGACTACCTTAAAAAACATGTTGAAGAAGAACATATTAATAAGCCATATGTTTGTACAGTGTGTAATAAACCTTTTAGTAGAGGCGAGCATTTGATTAGGCACTTGAAGGTCCATCAACCCAATCCAGATAAGGAGGCAAACCTTAAGTGTTCAATATGCGATTCCACCTTTACTAGgTCTGACTTGCTGGCACGTCATACTAAAGTTCATCTGTTACAAGACAAACGTCACGTGTGTGTCGAATGTGGGAAAGCATTCAATAGACTGGACAATCTGAAAACCCACCAGAGGATCCACACTGGAGTCAAGGACACTTCCAAATTACATTTGTGCATCTACTGCGGAAAGGAATTCAATAATTCCAGTAACATGATTGTGCACATGCGTAGACATACCGGTGAAAGACCATACAAGTGTACCGAGTGTGGGAAAGGTTTTCCAAGGTCGCACGATCTGAAATGTCACGAAAGAACACATTCTGGAGAAAAGCCATATCTATGTACTTTATGCGGGAAATCGTTTAATAAAAGTAACAAATTGctCCGACATAGTCGAGTACATACTGGTGAACGGCCTTATGTTTGCAATATATGTGGCAGAGCTTTTACCCAATCTAATGATTTGTCACTTCATATGCGTCGACATACTGGTGCTCGTCCGTATGCGTGTGGTGTCTGCCCTGCTCGTTTTATTCAGTCTGGCCAGTTGAAAACCCACCGCAGGACAACGGGACATTGGATGGAGACACAACCGGATCTCAAAGGAGGGCATAGAGTTGAACCTGTTACACCTGCTCATGAACCTATGCCAATTAGGTTTAAGTCGCATGGAAAACCGAAGAAGGAGGAAATTGCTGAGGAGACTGCAATATTAGAGCACCAACATATGCATGAAACTGTAGAGACCCAAACTATAGAGGAAATCAGTATAGTACCCGAAATTCAGTCAATTCAAACCCAGCCTCAGCGGATTCTAATGGGTATTATGGGgaatattaaaattcaaaatgataTACAGCCGCTTATTATAGATAGTACAAAGCTTGTGGAATTACATAATGCCGGGTTAGTTAATTTACCGTCTGTTATACAGACTACTAATGGAGATGAGATTAAGTTGAAGTCTGAAGTGGGCAGTTATAATATCAACCAATGTGAAGAGAGCATAGAGAAACAAGAGGCCAGTGCAAGTAGCACGTTCCAAGATACCACCGTTGTTTATTCTAGTGTAGGACACACTTCTACCACTTACACAACTAGTgaaaattttaactttcaaaattACCATTGa
Protein Sequence: MITKEIELIIDKICRCCMCENENMHNVFENKKDAEGSSSMHLSEMLIACASVEVVFGDGLPYNLCDSCESKLNTAYEFRQQCKKTDSALRELINTETKDNITKQEDIVIQPDVPDDYFDEEDDLPLLKRGMKRKRGRPKKRDGDNFACTYCHKVLHTKKGLRVHLRSHTGEKMRYCLFCNAKYTRTNHLIRHMGTHDKPGLTHPCENCDKTFTAAADLFKHSREHEEIDGKNRNIKQEDEEEIKPDLNPAGENIKLNENNLDDVEHIDDNFANDFPFSDGGEDNQIESDEDFIMNIKKEKKDIKKKKPEDKDKALYECKECTKVMTTYIGLKIHMRRHTGADLSFCKLCNKSFTKQSHLNRHMRTHGIIDTEKLKSFKQSTDAKGKRVMECDFCDRKFKYRKSFVHHMQVEHGMSDTESDFANTEDGAVNDKSELNISREDTDELEGVVDQNKLLELKSEINNDVELDQPVVDEDDGVPDAENVVVKKVRSKNQICHVCGASFARANHLTRHMTLHRAVLVHQCDRCEKAFATEDYLKKHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQPNPDKEANLKCSICDSTFTRSDLLARHTKVHLLQDKRHVCVECGKAFNRLDNLKTHQRIHTGVKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCTECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICGRAFTQSNDLSLHMRRHTGARPYACGVCPARFIQSGQLKTHRRTTGHWMETQPDLKGGHRVEPVTPAHEPMPIRFKSHGKPKKEEIAEETAILEHQHMHETVETQTIEEISIVPEIQSIQTQPQRILMGIMGNIKIQNDIQPLIIDSTKLVELHNAGLVNLPSVIQTTNGDEIKLKSEVGSYNINQCEESIEKQEASASSTFQDTTVVYSSVGHTSTTYTTSENFNFQNYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -