Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796662.1:42608591-42630281[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00019 0.022 17.0 2.4 1 23 398 420 398 420 0.97

2 18 0.00016 0.018 17.3 1.8 1 20 426 445 426 448 0.94

3 18 3.3e-05 0.0038 19.4 0.8 1 23 454 476 454 476 0.98

4 18 0.00044 0.05 15.9 3.6 3 21 484 502 482 504 0.94

5 18 5.8e-05 0.0066 18.6 4.6 1 23 510 532 510 532 0.99

6 18 5.5e-05 0.0063 18.7 5.3 1 23 538 560 538 560 0.97

7 18 2e-05 0.0023 20.1 8.2 1 23 566 588 566 588 0.97

8 18 2.1e-07 2.4e-05 26.3 2.7 1 23 594 616 594 616 0.98

9 18 0.00016 0.018 17.3 6.7 1 23 622 644 622 644 0.97

10 18 0.00021 0.024 16.9 4.8 1 23 650 672 650 672 0.97

11 18 3.5e-06 0.0004 22.5 3.0 1 23 678 700 678 700 0.98

12 18 7.3e-05 0.0084 18.3 8.0 1 23 706 728 706 728 0.98

13 18 6.1e-05 0.007 18.6 9.1 1 23 734 756 734 756 0.98

14 18 3.7e-05 0.0042 19.3 7.7 1 23 762 784 762 784 0.98

15 18 3.5e-05 0.0039 19.3 7.0 1 23 790 812 790 812 0.97

16 18 0.00014 0.016 17.5 0.4 1 23 818 840 818 840 0.97

17 18 0.19 22 7.6 5.0 1 23 850 872 850 872 0.98

18 18 1.4e-06 0.00015 23.8 1.2 1 23 878 900 878 900 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00019	0.022	17.0	2.4	1	23	398	420	398	420	0.97
2	18	0.00016	0.018	17.3	1.8	1	20	426	445	426	448	0.94
3	18	3.3e-05	0.0038	19.4	0.8	1	23	454	476	454	476	0.98
4	18	0.00044	0.05	15.9	3.6	3	21	484	502	482	504	0.94
5	18	5.8e-05	0.0066	18.6	4.6	1	23	510	532	510	532	0.99
6	18	5.5e-05	0.0063	18.7	5.3	1	23	538	560	538	560	0.97
7	18	2e-05	0.0023	20.1	8.2	1	23	566	588	566	588	0.97
8	18	2.1e-07	2.4e-05	26.3	2.7	1	23	594	616	594	616	0.98
9	18	0.00016	0.018	17.3	6.7	1	23	622	644	622	644	0.97
10	18	0.00021	0.024	16.9	4.8	1	23	650	672	650	672	0.97
11	18	3.5e-06	0.0004	22.5	3.0	1	23	678	700	678	700	0.98
12	18	7.3e-05	0.0084	18.3	8.0	1	23	706	728	706	728	0.98
13	18	6.1e-05	0.007	18.6	9.1	1	23	734	756	734	756	0.98
14	18	3.7e-05	0.0042	19.3	7.7	1	23	762	784	762	784	0.98
15	18	3.5e-05	0.0039	19.3	7.0	1	23	790	812	790	812	0.97
16	18	0.00014	0.016	17.5	0.4	1	23	818	840	818	840	0.97
17	18	0.19	22	7.6	5.0	1	23	850	872	850	872	0.98
18	18	1.4e-06	0.00015	23.8	1.2	1	23	878	900	878	900	0.96

Sequence Information

Coding Sequence: ATGAATACTGATAATCAAAATGTCCTTGCGGGAGGACATAGTTCTTCAAATTCAGAGggTACATCACAAAGACCTCCACCAACTACTTCGGTGCCTACCGATTTAAGGGTGAACACAACTGCGTTAAATGCTGTGGCATTAAGTAGTGTGGCAAAATACTGGGTGTTAACAAACTTATTACCAGGTCCTATACCTCAGGTTTCCGTGTATGGACTACCTGGAACAAGCAGAGAAAATCAGGGCAAATTAACACAGGAAATGCTTGGTCAACACGCTGGACTCCTTCCATCGGATCCTTTGCTCTTGCAACAGCATCCACAGATTCCTGTTAGTATATCATCTTCCCAAGCTAATTTGGGAATACCAGCAGGTGCCATACATCTTGATAATTCACACAACTTGACAAACCACCAGCATCAAAATGAAAACATGTCTTCACAGAATCAGAATCAGATGTCCAGAGACATAAGGATGTCTCATTCCCAGCAAAATATACAGCACGGAGGACAGCAAAATATGGTGCAAGTTCAAGTGCAAGATAACTTGGTATCTGTCATCGAAGATAATAAAGACCAGAAAGATCTTATTGCAGCCCAGCTACAAGCTGCTCAGTTACAACTTAACGAAAACCAACTCAACCAACAGGCTTTAACGGTTCAACAGTTGCAGCATTTACAAGTCCAGCAAGTTTTAGATAATGTGGTTCGTTTGGAAAACGAAAATGGTCAGAATCAATCGAACGACCAGGACCCTCTGGGCGATACAATTCAAATTGTTAAAGATGAAAAGACACTTCAGAATTGTAAACTTCTTAGTGGTGCCCAATTTGGTTTGCAGGAtctcaagggaaatttaatggATGTAAGAACAGCCGATGGGAGTATAGTAAAAATACAAACCAACATGCAAGAACAAGAATTAGCTAAGACTTTGGGGGTTGAAATGGTTCAGAATATGTACAAGGTTAATGTGGATGATTTGAATCAGTTGTTGGCTTATCAtgaaatttttggaaaactGCAGGGTAGTCAAGGAGAAATTACCAATACCAATCAAAACATTGTCCAAAATAATACGAACAACATTAATCTTCAGCAAAATTCTGGTGGCATCGCCATTATAACAAAAGATGAGCAAGAAGCGTCTACGAGCAACAACATTGATAATGCTAACCCTCCAGCTGTTGGTACTCATGTCTGTGatctttgtggaaaaatgttcCAATTTCGTTACCAACTCATTGTACATAGACGTTACCATACCGAACGTAAACCATTTACTTGCCAGGTTTGCGGTAAAGCATTTACAAATGCACAAGAGCTTAGTAGACATGGAAAATGCCACTTAGGAGGCAGTATGTTTACATGTGCTGTTTGTTTTCATGTATTTGCTAATGCTGCTTCTCTAGAGCGTCACATGAAAAGACATTCAACGGATAAACCGTATGGTTGTACAATATGTGGCAAGAGTTTTGTTAGGAAAGAACATTTGGACAACCACACTAGGTGTCATACAGGAGAGACACCATACAGGTGTCAGTATTGCGCCAAAACTTTTACCAGAAAAGAACATATGGTCAACCATGTGAGGAAGCATACCGGAGAAACTCCCCACAGGTGTGAAATTTGTAAAAAGTCCTTTACACGAAAGGAACATTTCATGAATCATGTTATGTGGCATACCGGTGAGACACCTCATCACTGCACTATTTGTGGAAAGAAGTACACGAGAAAGGAGCACCTTTCCAATCACATGAGGAGTCATACTAATGATACGCCCTTTAGGTGTGAAATTTGTGGGAAATCCTTTACAAGGAAGGAGCATTTCACGAATCATATTATGTGGCACACAGGGGAAACACCTCATCGCTGTGATTTTTGTTCGAAAACATTTACTAGaaaagaacatttattaaatcatGTGAGGCAACATACTGGTGAATCGCCTCATCGTTGTGGATTTTGTGCAAAGTCTTTTACTAGGAAAGAGCACTTAATTAATCACGTTAGGCAACATACAGGGGAAACTCCGTTTAGGTGTAATTTCTGTCCCAAGGCTTTCACTCGAAAAGATCACTTAGTTAATCACGTAAGACAGCATACGGGAGAGTCACCACACAAATGTACTTTCTGTACAAAATCGTTTACTAGGAAGGAGCACTTAAATAATCACGTTAGACAGCACACAGGAGAGTCCCCTCATAGGTGTCACTTTTGTTCAAAATCTTTTACTAGGAAAGAACATTTAACCAACCACGTAAGGATACATACAGGTGAATCCCCTCATAGATGTGAGTTCTGTCAAAAGACTTTCACTCGTAAGGAACATTTAACTAATCACTTACGACAGCATACCGGAGAGACCCCTCACtgttgtaatatttgtaataaaccGTACACCCGTAAAGAGCACTTAGTTAATCATATGCGTTCTCATACTGGGGAGCGTCCGTTTGCCTGCAATGAATGTGGAAAATCTTTCCCTCTCAAAGGCAATTTGCTGTTTCACCAGAGGTCCCATAATAAAGGTGCTACGGCTGAACGACCATTCCGATGCGATCTTTGCGAGAAAGATTTTATGTGTAAGGGTCACTTGGTTTCTCATAGGCGTTCACATAGCGGTGAAAGACCTCATGCATGTCCGAATTGTGGTAAGACATTTGTAGAAAAGGGTAACATGCTGAGGCACATGAGAAAACATGCAACTGAAAATGGTACAGCTGTACAAGTGAATAATCTTGCCAATCAACCGGTGAACCAAGTGCAACAACAAGGTAACCCCCAACAACAAAACCCTCAAGCAAATTCTGGCAATATTCAAATACCACAAGTGCAAGTAGGCCAGGCACAACAACAGCAGCAGCAGCAACAGCaacagcagcagcagcagcaacAGCAACAACAAAATTCGAATAGTAATATTGTGCAAACGTCTCATATGCCAATGCACCCACCGAATAGTCACCCAGTTGTTGTGCCGACAGCAAATGGTAATGTTTTGGCCTCATATTAG
Protein Sequence: MNTDNQNVLAGGHSSSNSEGTSQRPPPTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGTSRENQGKLTQEMLGQHAGLLPSDPLLLQQHPQIPVSISSSQANLGIPAGAIHLDNSHNLTNHQHQNENMSSQNQNQMSRDIRMSHSQQNIQHGGQQNMVQVQVQDNLVSVIEDNKDQKDLIAAQLQAAQLQLNENQLNQQALTVQQLQHLQVQQVLDNVVRLENENGQNQSNDQDPLGDTIQIVKDEKTLQNCKLLSGAQFGLQDLKGNLMDVRTADGSIVKIQTNMQEQELAKTLGVEMVQNMYKVNVDDLNQLLAYHEIFGKLQGSQGEITNTNQNIVQNNTNNINLQQNSGGIAIITKDEQEASTSNNIDNANPPAVGTHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELSRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYGCTICGKSFVRKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLSNHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCAKSFTRKEHLINHVRQHTGETPFRCNFCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNICNKPYTRKEHLVNHMRSHTGERPFACNECGKSFPLKGNLLFHQRSHNKGATAERPFRCDLCEKDFMCKGHLVSHRRSHSGERPHACPNCGKTFVEKGNMLRHMRKHATENGTAVQVNNLANQPVNQVQQQGNPQQQNPQANSGNIQIPQVQVGQAQQQQQQQQQQQQQQQQQQQNSNSNIVQTSHMPMHPPNSHPVVVPTANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310750;
90% Identity: iTF_00110755;
80% Identity: -