Rmor044577.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
clz9
Assembly
GCA_963680705.1
Location
OY796662.1:33864498-33867125[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-07 8.5e-05 24.0 0.0 1 35 11 45 11 53 0.91

Sequence Information

Coding Sequence
ATGCCTGAAAAACGAAAATTGTTTGCGTACTCCgaagatgatttaaaaaatgccttGCGAGATATTAAAGATGGCATGCCTGTTCTTCAAGCAAGTAAAATTTATAATGTTCCGAGAACTACGCTACGGCACAAGATATCTGGAGAAAGTCCGGAAACTACGGGAAAAGTTGGACCTGAATGTGCGCTAGGAAGAGACGTTGAAAGACAGCTATGTGAGTGGATAAAAAATCTGTCAAAAATGGGTTTTCCTATTAATAAAGAGGGATTAGTTTATTCAGTTAAACAAATTGTTTCCACTTTAAACATTCCAAATCCCTTTAAAAATGATCTTCCTGGAGAAAAGTGGTTCAAGCTGTTTATGCGACGTCACTCCGAACTTTCTGTAAAACAAGCAGAATATATAAATAAGGCTAGGGCTAATATTACACCCGCTAAAATTACCAGATGGTTTCAGGAGACACTGGAACTTCTTGGACAGGAGTCATGTGTACTAAATGACCCAAAGCGAGTTTGGAACTTAGACGAAACTGCGCTCTATTTAAATCCTGCTGGTAACACAGTTATTGCAGAAAAAGGAAAGCACTGCTATGGTACGTCTAGAAACAGTGATAAAGAGAACATCACTACATTAATATGCGTAAATGCTGTTGGTGAATTCGCCCCGCCATTGACGTTATTTAAGTTTGAGAGGATGCCCTCGAACTATTCACAACTAGCACCACCACACTGGGGAATACGAAAATCTAAAAATGGGTGGATGACATCAGAAactttttatgaatatttcacTAACGTTTTTTATCCGTTTTTACTACAAGAAAAATATACCATGCCAATCATTGTTTTTCTTGACGGACATACTTCGCACCTTAGTATACATCTTAGTAGATTCTGTAAAGAAAAAGATATTATTCTAGTGTGTTTATATCCTAATACCACGCACATCTTGCAGCCCTTGGATGTATCCTTCTTTCGTCCATTAAAAGCACACTGGAAAAGAACTGTATCACAATGGCGAATTAGGACTGGAGGAAGAGAAATTAGGAAGCCGGATGTCCCACAAGTACTGCATGACATTATGGTAAATCATAATTTCAAAAGAACTATTGAAAATGGGTTTAAAAGATGCGGTCTATACCCGTTCACACCAGATAATGTAGATTATACTAGGTGCACTTTAAAAGATAAACCGCAAGAAGATCCTCCAACTCAAACACATCTACCAGATACACTAAGCCACTTGGAATACTTAGAATCAAAATTTGAGGAAGATATATTAAAAGCATTTAAAGAATGTTTTGACAAAAATGTTTTGCCAAGTGAAATGGCCTACACGAGGCTTTACGATGTATGGGTACAATTTAAAAACGACTCTTCCTTTCCTCCTAATTCAAACTATTTGCAGCACATCAGTGATAGTAGTGAGATTTTTGAATTTCCTTTTCCTGAATGGTCACTTCAAGATAATTTACTAGAAACCAGAAATGAAACTGTGATCTCGTTAAGCGAGGACTGGGGCGAGGACCTAATTATTGAAAACGCTGAAAATGATCAAAACAACAATCTTGATGCAGAATCACTAATACACGAACACAGTTCAATAGCGATTGAATCTGAAGAAAAGGTCATAAATAACACAGACGATTTGCATGACTTCAGAAAGAGCAGAAAAgaggaaaataattttattaaggaaGATGGTCCGgaaacagaaaatgaaaaatgtggGATCTATGAAGTAGAAAGTAATACTGTCAATACTGGCAGCTGCTTTATGAGCACTGATGggacaaaaataattgaaacagaTTTAATTGATATGCCAGTAAAAAAGAAAGGCGATCAAATACATAATCAAAATGCTGAGCAAAATGTTATATATACTGAATTAGAATGCAAAAACAACGGAACTGACAGTGTCAATAGCAGAAGAGATCAAACTGCGGAGGGCAAAATTAATATACTGAGTGATATACTAATATATCCTTTGGAGAATTCACCTCAAGGAATGAAAAGGAAACGAGAACATTTACCAAGTGTGCTTACCTCGAATCAGTGGTTACAGATAGCAGAAGAAAAGGAAAGAGCAAAAAAGAAATTGCTAGAAGATAAAGAGAATAGAAAAAGGAAACGCGCAGAACGAAAAGGGGTAATCGATGATAAGGCAATACGTATCAGAAAAAAGAAACAGACAGCATATACGAACAAGCTGTTAGAAAACCCTAAAGTTAAACGTACACCACCAATAAAAGTAAACTAtacagaaaatcaacataatgATCCAAAAGAAGAACCGGAAGAAATAGATGTGGACATGATAGGAGAAAACAATATATCTGATGAGGATGTCCCTTTGGTTGTTCCTGTAGGCACATATGTTGttgttcattttgaaaataaatattacccAGGTGTAGTGACGCAGATACAAAGTAATCAGTATATGATTTCTACAATGGAAGCGAGTACTTCAGATTGGAAGTGGCCAGCACATAAAGATGAAATACTCTACGATTGGGAAGAAATAAAGCAAATCATAAATTGTCCCTCTAAAAAGAATAACAGAGGTATATTCAGCGTACCCGAGAtgaaaaaatatcaaacaaatgcaatatcaataatataa
Protein Sequence
MPEKRKLFAYSEDDLKNALRDIKDGMPVLQASKIYNVPRTTLRHKISGESPETTGKVGPECALGRDVERQLCEWIKNLSKMGFPINKEGLVYSVKQIVSTLNIPNPFKNDLPGEKWFKLFMRRHSELSVKQAEYINKARANITPAKITRWFQETLELLGQESCVLNDPKRVWNLDETALYLNPAGNTVIAEKGKHCYGTSRNSDKENITTLICVNAVGEFAPPLTLFKFERMPSNYSQLAPPHWGIRKSKNGWMTSETFYEYFTNVFYPFLLQEKYTMPIIVFLDGHTSHLSIHLSRFCKEKDIILVCLYPNTTHILQPLDVSFFRPLKAHWKRTVSQWRIRTGGREIRKPDVPQVLHDIMVNHNFKRTIENGFKRCGLYPFTPDNVDYTRCTLKDKPQEDPPTQTHLPDTLSHLEYLESKFEEDILKAFKECFDKNVLPSEMAYTRLYDVWVQFKNDSSFPPNSNYLQHISDSSEIFEFPFPEWSLQDNLLETRNETVISLSEDWGEDLIIENAENDQNNNLDAESLIHEHSSIAIESEEKVINNTDDLHDFRKSRKEENNFIKEDGPETENEKCGIYEVESNTVNTGSCFMSTDGTKIIETDLIDMPVKKKGDQIHNQNAEQNVIYTELECKNNGTDSVNSRRDQTAEGKINILSDILIYPLENSPQGMKRKREHLPSVLTSNQWLQIAEEKERAKKKLLEDKENRKRKRAERKGVIDDKAIRIRKKKQTAYTNKLLENPKVKRTPPIKVNYTENQHNDPKEEPEEIDVDMIGENNISDEDVPLVVPVGTYVVVHFENKYYPGVVTQIQSNQYMISTMEASTSDWKWPAHKDEILYDWEEIKQIINCPSKKNNRGIFSVPEMKKYQTNAISII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-