Rmor047928.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796663.1:12229468-12229800[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-07 3.7e-05 25.2 0.0 3 40 20 57 19 60 0.91 2 2 2.7 7.7e+02 1.7 0.1 23 34 83 94 82 102 0.84
Sequence Information
- Coding Sequence
- ATGCCCAGAGTTCATAAACATCTGTTAGGAACATCTTACAGGAGAAACTATCCCGCTGATAAAGTTGAAGAAGCCCTTAGGTCTGTAATTGAGGATGGATGTTCTTTTGGTCAGTCGGTGAACCGTTATGGTGTTCCGAAAACCAccatatatagaaaatatagggGGATGAATTCAGATAGATTAGGCAAACCTCCAGTGCTTTCAGAGAGGGAAGAAAAACAAGTTGTAGAGGCATTGATGACAGCAAGTGCATACGGCTATCCATTTACCACATTtgctttaaaacaatttatacaaCACTATTTATACACAGTTTATAATTGGAGATAA
- Protein Sequence
- MPRVHKHLLGTSYRRNYPADKVEEALRSVIEDGCSFGQSVNRYGVPKTTIYRKYRGMNSDRLGKPPVLSEREEKQVVEALMTASAYGYPFTTFALKQFIQHYLYTVYNWR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289808;
- 90% Identity
- iTF_01289808;
- 80% Identity
- iTF_01289808;