Rmor004737.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- clz9
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:48505041-48507160[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 3.1e-08 35.0 0.0 2 40 17 55 16 60 0.92
Sequence Information
- Coding Sequence
- ATggttagaaattataaaagaaaaaccaataGGGGGGACTCTTATTCCCAAGACAATCTAAAAGAAGCAATTCGCAGAATACGTGCAGGAGAAATAACTTTGTACCGTGCTGTCCAAAGATATGGTATACCAAAAACTACATTGTATAATCGGTTTAAGGGAAATAGAGGCCAACTAAGTTCTACCCAAGGAAGAAGAACAGCTCTCCTACCCGAGCAGGAAGAAGAGCTAGCAACATATCTGAGACTAATGGAAAAGTGGGGATTTGGCATAACTCGCAAAGAGCTTTTCCAAATTGTTGCTGAATTTGTACAACGTAATAACTTTCAAACACCATTTAAAAACAACTTTCCAGGCGAGGACTGGTTCTTGCAGTTCAAAAGAAGGCACAAGTTGTCCTTAAAGAAGCCTCAATCTGTTGAAATAGCCCGAAAAAATGCCGCCTCGGATCCTTTTTCTGTCAACACTTACTTTGACATCCTCAAGGAAACCATAAaggataataatttagaaaacaaGCCGAATCAAATTTACAACTTGGATGAGACGTACTTTTGCCTGGATCCATCGAAATTGAAAGTAGTGGGTGCTATCAATTGCCCATCAACTCGCACCACTAGCGGACCAGGTAAGGAAAATATAACCGTATTAATCGCTGCCAGCGCTAGTGGTAACAAGCTCCCCCCCATGATTATATTCAAAGGGAAGTACTTATGGGATGCCTGGATGGCGCCCGCGGACCAAAGTTTCCCACATTTAGCATATGCATGTTCCCAAAAAGGATGGATGGAGACAGATATTTTCCATAAATATCTTGAAACCAGTTTCATCCCGCATATTGGAGAAGCCCGCCCTGTATTGCTGATCTACGATGGCCATACGACTCATATTGATCCACGGACTCTTAGGCTTGCCTtggaaaatcaaataattattattaagctTCCACCGCATACAAGTCATATATTGCAGCCCTTAGACTTGAGTGTGTTCAAATCCATGAAAACGGAATGGGAGGCGAAATTGGTTGCATGGCAGAGGAAACATGTCGGACAAAAAGGGGGAATTGTCCCTTTTAATAGAGAAGTTATAAAACCAGCACAATATGATCCTGCAGCTTATAAACGTTGGCAATCTCATGTACAATTGCAAAATCAAAGACTAGCAGAACAAGTCGAACATGAAGCAAATAGAGCAGAGACAGTTGAAAGACCACCATCTACCCACGAAATAACAGAAAGTAATGAAGTAGTTACAAAGAAGAAAAAACATGAAGTTGAGAGTAGTCATTCATATCATGAAGTCACCCAAAGTGTATCCAATATAGGAAATTCCCTTTCCTCAAATATGTCTTTAGATGATGATGTTGTCACTTCATCACCATCATATCATGAAGATTCAAGTGACGAAAATAGTAACACAGTACTATCATTACATGACTCAGAAAGTgagtttgaaaatattgaagagTTTGTTCAACAGTACGACGAAGAACCAGATGAAGAACCAGAAGAACCAGAAAAACTAAAAGTGGGTAAATGGTTATTAGTAGAATTTGCTacgaaaaaaacaaagaaacatTACGTCGGGCAAATACTCCAAATATATAAAGACGAAATGAAAGTAAAATTCATAAGAAGGAAGGATGGCGAAACCAAAAACACCTTCGTTTGGCCTCTAAAAGAAGACGAAAGTGTCATTTCAGAGGATGACATTGTCATGGTCATACCCGAACCCAATCTAGGACGAAGGGGAGAACTTATTTGTACCGTCACATTTGACGGCTACAATGTTCAGTAG
- Protein Sequence
- MVRNYKRKTNRGDSYSQDNLKEAIRRIRAGEITLYRAVQRYGIPKTTLYNRFKGNRGQLSSTQGRRTALLPEQEEELATYLRLMEKWGFGITRKELFQIVAEFVQRNNFQTPFKNNFPGEDWFLQFKRRHKLSLKKPQSVEIARKNAASDPFSVNTYFDILKETIKDNNLENKPNQIYNLDETYFCLDPSKLKVVGAINCPSTRTTSGPGKENITVLIAASASGNKLPPMIIFKGKYLWDAWMAPADQSFPHLAYACSQKGWMETDIFHKYLETSFIPHIGEARPVLLIYDGHTTHIDPRTLRLALENQIIIIKLPPHTSHILQPLDLSVFKSMKTEWEAKLVAWQRKHVGQKGGIVPFNREVIKPAQYDPAAYKRWQSHVQLQNQRLAEQVEHEANRAETVERPPSTHEITESNEVVTKKKKHEVESSHSYHEVTQSVSNIGNSLSSNMSLDDDVVTSSPSYHEDSSDENSNTVLSLHDSESEFENIEEFVQQYDEEPDEEPEEPEKLKVGKWLLVEFATKKTKKHYVGQILQIYKDEMKVKFIRRKDGETKNTFVWPLKEDESVISEDDIVMVIPEPNLGRRGELICTVTFDGYNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289823; iTF_01289738;
- 90% Identity
- -
- 80% Identity
- -