Rmor043913.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- RTase
- Assembly
- GCA_963680705.1
- Location
- OY796662.1:28881143-28885912[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-10 6.8e-08 33.9 0.0 2 40 23 61 22 64 0.90 2 2 6.7 1.9e+03 0.5 0.0 23 32 573 582 570 584 0.81
Sequence Information
- Coding Sequence
- ATGCCAAGACGAAAGGCGGGTATACTACCTGGCGTTCGCCATTATGGAACTAAGTCAAATTACACGACTGAAAACCTACATGAAGCTCTTGAAAAAATAAGATCTGGTACTCTTGGTCATAGAGAAGCGGCTAAAGTATACAAGATTCCCCGTTCaacattgaaaaataaattaaaagggAAACACAAAAACGAGGTTGGACGTCCAACAGCCCTTACCCACTATGAGGAAGTTATTGTAGTAAACCACATAATTGCGATTAGTCAACAGGGTATACCGGTAACTCTACAAGATgcaaaaaataaatggacggACTGGATGTACAAGGCTCCTTCAGGCTCCAGACTGAATGTATTAAAAAGTGGTTGGATAGATACAGATATATTTGATGATTGGTTTGAGTATCAGCTATTACCGGTCTTGAAAAGTAAAAGTGTTTCAGCTGAGGAAGTTGAAGCatattatagaaataaagaAGAAGCTGCCAAAGAAAAGGGAAAAGGTAAACGAAAAAAACCTCCAAACACAAAAAAAGATCAACCCAAGAAGAGAAAAGTCCCCAACAAGACGAAGAATGTTCTTTCTTCAGACAGCAACTCAGATGTTGATATGGCTTTAAATAACTCTGACATAGAAAATCAAGAACCGATAGCTACAGAAATGGAAACGGAAAACTGGAACACTGAGGAAATGTATGAGAATGACCAAGAAATATTTTCAGTAGAACTAGAAATGGAAAATTTGGACGTCAACACTAAAAATATTGATGGGAACGAGAAAAATGAAAGGACAGAAAATGAGGCAGAGAGCATGAATAAGAAcaccaaatatgaaaaaatacatGTAATAGGCAACGAAATCGTGAAAATGCCAACTATAATCCAACCTTACGATGAAGCGGGACCTTCGTCAGCAGTATTTGAAGAATACATCGTTTTGGCTCCTGACCTACAGCAAGTTTTAGAACCTACACCGACCACAgaatcaaaatatcaaatagATGACTACGTTGTGGTGCACTATAATAATCAGTATTTCCCTGGTATTGTGACAAAGATcagtaaaaatcaaaataacaattttacttACCTTGTAAATGCAATGGAACGGGTTGGAAAGAAATGGCAATGGCCGAAGAGGAGAGATGAGATACTCTATGACGAGGAAgatgtaataaaaaaagttaacgACGACGATGTCAAACCTCATACCAACAGAGCAATATTTAATGTTAAGGATTCAATTCTTCTAGAAAAATGGATGGATGGTTCAAAATATCAACTAAATGACTCTGTAGTAGTGAATTATGATAACAACTTCTTCCCAGGCATTGTGACAGAGGTAATAAGAGAAGAcaataaattcctatttaagTATTTCagtaaaatattcgaaaaagtaataaaaactaGATTAGTATCTTACCTCAACAAGTATCATTTACTTTCGAACAAACAATATGGATTTAAAGAAAACGTTTCAACCCATGATGCAATACTAGACTTAACATCGAATATATATTCTTCTCTAGATAAAAGTACACCATGCCTATGTGTATTCATTGACCTTGCGAAAGTATTTGACACCGTCAGCCATTCTCTACTCTTACAATCACTGGAGAATATTGGAAATAGACAAGAATGTTTAGGTCTGTTCAAAAATTACATATCTAATAGGAAACAGTGTGTGAGAGTAGATGTTTGCGATGACAAATTAACCATTGAATACGGCATTCCACAAGGTACGGTTCTGGGACCTGTACTTTTTTCCATATACATTAACGAactattttctttaacaaataGAGGTCATATTGTTGGTTTTGCAGACGATACTGCTATCTTCTATAAAGCCGACACATGGAACGAGCTAAAGAAGTTAGTAGAAAGTGACTTATCAATCATTAAAAATTGGTTTGATTGCAAACTATTAACAGTTAATCTAGAGAAAACTAACTACATATAG
- Protein Sequence
- MPRRKAGILPGVRHYGTKSNYTTENLHEALEKIRSGTLGHREAAKVYKIPRSTLKNKLKGKHKNEVGRPTALTHYEEVIVVNHIIAISQQGIPVTLQDAKNKWTDWMYKAPSGSRLNVLKSGWIDTDIFDDWFEYQLLPVLKSKSVSAEEVEAYYRNKEEAAKEKGKGKRKKPPNTKKDQPKKRKVPNKTKNVLSSDSNSDVDMALNNSDIENQEPIATEMETENWNTEEMYENDQEIFSVELEMENLDVNTKNIDGNEKNERTENEAESMNKNTKYEKIHVIGNEIVKMPTIIQPYDEAGPSSAVFEEYIVLAPDLQQVLEPTPTTESKYQIDDYVVVHYNNQYFPGIVTKISKNQNNNFTYLVNAMERVGKKWQWPKRRDEILYDEEDVIKKVNDDDVKPHTNRAIFNVKDSILLEKWMDGSKYQLNDSVVVNYDNNFFPGIVTEVIREDNKFLFKYFSKIFEKVIKTRLVSYLNKYHLLSNKQYGFKENVSTHDAILDLTSNIYSSLDKSTPCLCVFIDLAKVFDTVSHSLLLQSLENIGNRQECLGLFKNYISNRKQCVRVDVCDDKLTIEYGIPQGTVLGPVLFSIYINELFSLTNRGHIVGFADDTAIFYKADTWNELKKLVESDLSIIKNWFDCKLLTVNLEKTNYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -