Rmor012528.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- clz9
- Assembly
- GCA_963680705.1
- Location
- OY796657.1:31663589-31666183[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-11 8.6e-09 36.8 0.0 1 39 15 52 15 58 0.89
Sequence Information
- Coding Sequence
- ATGCCAAAAGCTAAGAAAGATAAACCTTACAATAAAAAGTACACAGAAGAGGATCTATGTAATGCTCTTAAAGCATACAAAAATGGTATGAGTCAAAGAAAAGCTGCCGAACAATTCAATGTACCAAGGGCTACCCTGCAATTTCGAGTGAGTGAGAAGTTTCACGACAAAACTACCCACGGTCCAAATCCAATTCTTTCTTCAGATGAAGAAAACCGCCTTAAAGATTGGATATTTACGTGCCAACGGAAAGGATTTCCTTTAAGAATAGACGATGTACAAGAGTCGGTAAAAGGTTTTTTAGACGCAAATTCCCGCGAAAACCCATTTCAAGGAAACAGGCCTGGAAGGGGTTGGTATAAAGCTTTCCTAAAGCGGCATCCAGACATAACACTCAGAACTCCCGAAGCAATTACGGCGGCAAGTTCAAATGTATCCGAGTATGATATTCGAAAATGGTTCACTGGAGTTGAAGGCTATCTGAATGAAAAAGGATACAGTGATATTCTCATAGACCCATCACGAATTTTCAATGGTGATGAAACTTGTTTCCTTTTATGCCCAAAAAATAAGAAGGTTTTAGCTGTAAAGGGGTCCAAAAATGTATATGAAATTGAACATAATCCGAAGGTTAATCTTACGGTAATGTTCACATTTTCAGCATCTGGAGAAATAACACCACCGATGATTATTTATCCCTATAAAAGGTTACCATCGGATGTTCTAAAATCAGTTCCTGATGGCTGGGGCGTAGGGTGCAGCGATTCAGGTtggatgaaaaatgaaaatttttatgaGTATATAGGGAACGTTTTGTATAAGCATCTGGTTGCTAAACATGTTAAATTTCCCATAATATTATTTGTTGATGGGCATAAGACCCACTTAACCCTTCAAACCAGTCAACTATGTTccgatttaaaaataatattagtggCGTTGTATCCCAATGCGACCAGGATTATGCAACCAGCTGATGTTGCAGCATTTaaacctttgaaaaataacTGGAACAGAGCTGTTCTGCAATTCAGAAGAGAAAACCCAAATAGTGTTGTGACAAAGGAAGCATTTGCATCTGTATTGAAAACAGCAGTTGCTGATTTAAAGACACAGACTATCGCAAATGGATTCAAAGCATCCGGGCTTTGTCCATGGAATCCATCAGcaattgatttttcaaaatgtttaggGAAAGTTATTAATATCGATCGGGTAAAAAATAACACTATACCTGATCAAGCATCAATAACTTATAatgattttgtaaaaatagtTGGAATAGAGAAGATTCTGATGtttcaaaatttagaaaaccgtgAAGAACTCAATGAAGACTTGCagttgatttataatatatatgaaACTTTTGCAACAAACTATGGAGCTTTGGAACAAAATAAAACTCATATTGCTACTATTGAATTTGAACAATTCAGACCAGATGAGGTACATACTTTTAATATACAGGACTTACCTGTTATGACTGAAGACGATGTATCGCTTAATATTGAAACTACATCGAATATTCCATCTACAATTATACAATATTCGAGTCCATTGAGTTCTTTCGCTGATCAAGGAATCATTGAGATGCCTTCTACATCTACGAATCTGCCTCAAGAGGTAAATAAATCTATAGAAAAGTTCTTTTTCTGGCCAAAAACTCCTGAAAGAAAGGGTCAAAAGCAAACTGAAAAATTACCATTTGTTCTTACATCTTCAGTTCGTAAAAatgcagaaaaaataaaaattgaacagAAATTACAACAAGAAAGATTGAAGGAAGAAAGAAAacagaaaaggaaagaaaatcAGAATGCGAAATTTCTACAGAAAGGCAAAAAAACAAAAGTACCAAAGAAACAATCcatacaaaagaaaaaagaaaccGAAACACAGAGGGCATTTTCATACATTCCCGGCGATGGCTCAAATACTGAAAACCAAGAAGACGTTTCCAAAGAGCCTACAATGCCTACAGAACCCATATCAAAAGAATATACAGATGACGTTAACCAAATTGAAAGTACTATTTTAAAACGTGGACTAAAAGTACATTTGCCAAAGAATAAGTTTACGATAGAATTAGGAAGAAATATTATTGAAGAAAATTCTAATTCCTTTAAGGGCAATAATTCTGATATTACCAAATCAATTCTGAAAACCAAAGATTGGTTACATAATATACAGGACTCAAAGGGAATTTGTTTTTCTAACACTAAATCTGTAATTGAAGATATCGAAACATTTCCGGAAACAATGGCACTAACACCACTAAAAGAGATTAGAAATATCCCAGATTCAACAAAAAGGAAACTGTTTTTGGATCAACAAAATGATCAGcctgaacaaaaaaaaatatttgttatttcagATATTGTGGTTGAATCTAACGATGATAAGGAGTTTTTCCCAAATAATACTATCATTTACAAAGGCTTATGTTACACTTGTTTAATGAATATAACACATTATCGAAGTGGTGTTAGATGTCAGTATTGTCTTAGGGGCTACCATGTCAGCTGTGCTAAAAAAATTGCGCAGTCTCAAAGTGATTTATTTTTGTGCAATAGTTGTAAAACCAAAGTCTAG
- Protein Sequence
- MPKAKKDKPYNKKYTEEDLCNALKAYKNGMSQRKAAEQFNVPRATLQFRVSEKFHDKTTHGPNPILSSDEENRLKDWIFTCQRKGFPLRIDDVQESVKGFLDANSRENPFQGNRPGRGWYKAFLKRHPDITLRTPEAITAASSNVSEYDIRKWFTGVEGYLNEKGYSDILIDPSRIFNGDETCFLLCPKNKKVLAVKGSKNVYEIEHNPKVNLTVMFTFSASGEITPPMIIYPYKRLPSDVLKSVPDGWGVGCSDSGWMKNENFYEYIGNVLYKHLVAKHVKFPIILFVDGHKTHLTLQTSQLCSDLKIILVALYPNATRIMQPADVAAFKPLKNNWNRAVLQFRRENPNSVVTKEAFASVLKTAVADLKTQTIANGFKASGLCPWNPSAIDFSKCLGKVINIDRVKNNTIPDQASITYNDFVKIVGIEKILMFQNLENREELNEDLQLIYNIYETFATNYGALEQNKTHIATIEFEQFRPDEVHTFNIQDLPVMTEDDVSLNIETTSNIPSTIIQYSSPLSSFADQGIIEMPSTSTNLPQEVNKSIEKFFFWPKTPERKGQKQTEKLPFVLTSSVRKNAEKIKIEQKLQQERLKEERKQKRKENQNAKFLQKGKKTKVPKKQSIQKKKETETQRAFSYIPGDGSNTENQEDVSKEPTMPTEPISKEYTDDVNQIESTILKRGLKVHLPKNKFTIELGRNIIEENSNSFKGNNSDITKSILKTKDWLHNIQDSKGICFSNTKSVIEDIETFPETMALTPLKEIRNIPDSTKRKLFLDQQNDQPEQKKIFVISDIVVESNDDKEFFPNNTIIYKGLCYTCLMNITHYRSGVRCQYCLRGYHVSCAKKIAQSQSDLFLCNSCKTKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289780;
- 90% Identity
- iTF_01289780;
- 80% Identity
- -