Rmor055077.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796664.1:26877746-26878090[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-12 9.8e-10 39.8 0.0 1 42 18 60 18 61 0.96 2 2 5.4 1.6e+03 0.8 0.0 22 35 82 96 81 101 0.83
Sequence Information
- Coding Sequence
- ATGGGCCGAgtctgtaaaaaaaaattgggcacGAGAAATTATCGTAACTATACTGAAGAAACCCTTAACCGTGCTGTCAATGATATCCAAAACAGAAATGTTTCAATTGGTGAGGCTTCCGATTTATTTCATATTCCCCGAAGAACTCTGTGGAACAAAGTTCACAGAAGGCATTTAGAGAAACCTGGAGGTGCAACGACACTTACAAATGTTGAAGAAAGGCATATTGTTGATGTTCTGCTAGCAGCAGCAGAATATGGCAGTCCACTGACTAGTTTGGATCTAAGGATGGTCGTGAAACAATTTTTAGACAGACAAGGTCGAGTAATCCCCAAAGTTACATAA
- Protein Sequence
- MGRVCKKKLGTRNYRNYTEETLNRAVNDIQNRNVSIGEASDLFHIPRRTLWNKVHRRHLEKPGGATTLTNVEERHIVDVLLAAAEYGSPLTSLDLRMVVKQFLDRQGRVIPKVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -