Rmor056041.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- clz9
- Assembly
- GCA_963680705.1
- Location
- OY796664.1:32320823-32322558[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-13 4.4e-11 44.1 0.0 1 41 17 57 17 59 0.93
Sequence Information
- Coding Sequence
- atgagaacGTATGAGAGAATCCCGGGTAGCCGAACCTACCACAACTTCACCGAAGAACAGGTGGCCGAAGCGGTGAGTGCGGTACAAAATGGTATGAGCAAAAAACAGGCGGCCAGGATTTACAAAATTCCACGGAGTACGCTTACTAATAGATGCCTTGGTAGGCATACAAAACCTAGAGGTCATCCAACCATCCTGAGTTCGGAAGAAGAGACCGTAATTGCAAGAACCCTGGGCGTCGTGGCAGATTGGGGCTTTCCACTTACTAAGGCTGATATCAAGCAAATAATGAAGAAATATTTGGACAAAAAGGGTATTGTTATTCCTATCCTAAAAGACAATCTCCCTGGGGACGATATGGTAGCGTTATTTATCCAGAGAAACAATTTGGCTGTGAGGATAGCATCAAACATAAAAAGATCCCGAGCTTCTGTTGACCAAGACGACGTTAATAAGTTTTTCGAAAACATAGCGCCGGCTTTATTAGAATCTACAGGTGACCATATATATAACTACGACGAGACCAACATCACGGACGACCCTGGAGCACGGAAAGTCATTGTTCCTAGAAATTGCAAAAGGGTGGAAAGGGTTCAAAATTTTTCGAGAACAGCAATCAGCATCATGGTGTGTGGAACTGCAAGCGGTGACCTTCTGCCTCCCATGGTCGTTTATAAGGCCTCCAACCTTTACGAAAATTGGTGTGTCGGTGGGCCTACTGGAACTGTATATAAAAACAGCCCAAGTGGATGGTTCGATGCCAATCTCTTTGAGATCTGGTTTTGTCAAATTTTGCTGCCACACATCCAACGCACAAGAGAACCAGGAAAGAGAGTCGTCGTAGTGGGCGATAATTTGGCTAGTCATTTTGCCCCAAACGTCATTCGGGTTGCACTGGaacatgatatttatttaacaccGTTTCCACCCAATGCCACCCATCTAATGCAGCCTCTCGATGTTGCAGTTTTTGCGCCCATGAAAAAAAAGTGGCGTATGATTCTAGATGCGTGGAGAAAGGAGACCCGCTATCCTGGTTCCATCCCTAAGGAACAGTTTCCTCTGCTGCTGAACAGACTCTGGTCGCAGATTCAACCCAACGtccaacaaaatttaatttctggCTTTAGAGCCACTGGGCTCTATCCATGCAACCCACAGGAAGTTATTAAAAGGTTGCCGGATGCTACAGTCCAGCAGGAACAGGTGGGGCGTCTATTGGACACAAGCCTTGTTGAACTATTGCAAGAACACAGGGGTGTTGCTAAAGATCCGTCCACCAAACGCAAGCGTGGGAAAAAGGTTGAAGCTGGCATGAGAATTGTGCCTTTACCTGTGATTGCAGATGAACCAGCCGAAGAAGCTGCTTCAAGCAGCAAGAAAAGAACTTCGGAGAGAGTAAAACAGATAGAAGATAAATGCAGAATTTGTAAAATGCTGTGGACAAACTACCGAGGACATGTGGATTGGATAAAGTGCTGCAAGTGCCACAAATGGGTTTGTGGCGTTTGCAACGAGGACAGTAAGGATCCCTATTTTTTGTGTGCAGTATGCGACGATGATTCAACTGATGAAGATCCGTTCCAGACGGATGAAGAAGAGGAATTCGTGccctaa
- Protein Sequence
- MRTYERIPGSRTYHNFTEEQVAEAVSAVQNGMSKKQAARIYKIPRSTLTNRCLGRHTKPRGHPTILSSEEETVIARTLGVVADWGFPLTKADIKQIMKKYLDKKGIVIPILKDNLPGDDMVALFIQRNNLAVRIASNIKRSRASVDQDDVNKFFENIAPALLESTGDHIYNYDETNITDDPGARKVIVPRNCKRVERVQNFSRTAISIMVCGTASGDLLPPMVVYKASNLYENWCVGGPTGTVYKNSPSGWFDANLFEIWFCQILLPHIQRTREPGKRVVVVGDNLASHFAPNVIRVALEHDIYLTPFPPNATHLMQPLDVAVFAPMKKKWRMILDAWRKETRYPGSIPKEQFPLLLNRLWSQIQPNVQQNLISGFRATGLYPCNPQEVIKRLPDATVQQEQVGRLLDTSLVELLQEHRGVAKDPSTKRKRGKKVEAGMRIVPLPVIADEPAEEAASSSKKRTSERVKQIEDKCRICKMLWTNYRGHVDWIKCCKCHKWVCGVCNEDSKDPYFLCAVCDDDSTDEDPFQTDEEEEFVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289685;
- 90% Identity
- iTF_01289685; iTF_01289688; iTF_01289690; iTF_01289691; iTF_01289692; iTF_01289693; iTF_01289694;
- 80% Identity
- -