Rluc016775.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010005454.1:28979-33277[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 1.6 10.1 4.6 2 23 302 324 302 324 0.91 2 13 0.035 3.5 9.0 5.5 3 23 397 418 396 418 0.95 3 13 9.3 9.3e+02 1.3 7.6 3 23 570 591 569 591 0.95 4 13 0.0094 0.94 10.8 0.3 2 23 650 672 650 672 0.92 5 13 0.0031 0.31 12.3 2.6 2 23 758 780 757 780 0.95 6 13 0.013 1.3 10.4 2.0 2 22 812 832 811 834 0.88 7 13 0.012 1.2 10.4 3.6 2 23 887 909 886 909 0.96 8 13 0.026 2.6 9.4 2.0 3 23 924 945 922 945 0.94 9 13 0.00026 0.026 15.7 0.7 2 23 995 1017 995 1017 0.94 10 13 0.15 15 6.9 1.1 1 23 1117 1139 1117 1139 0.98 11 13 0.02 2 9.7 1.1 1 23 1154 1176 1154 1176 0.97 12 13 2.2 2.2e+02 3.3 8.1 1 23 1246 1269 1246 1269 0.96 13 13 0.72 71 4.8 1.9 1 23 1298 1321 1298 1321 0.96
Sequence Information
- Coding Sequence
- ATGAGTTCTACTGTTGTTGACTCAGCGGGTACAGGAACGGGAAATGGAATCAAAAGCGCAGAGTATAGCGACGGAGAAGACTCATCCAACTCCGGCGAGGAACTGGAACACCACGATGAGGAGGACATCGCCCCGGGCAGCGTCATAGACACTCCAACCTGCAAGCGTCCCTTTCAGGACAGCCAAACCGAACCCGACCAGTCTCAGGCCAAGAAGCGGCGGAAGCAATCGAAACCAGTTCGCGTGTTTTCACTCACTGAACCATCCAGCGACGACGAACCGGAAGCCAGCAATGAAGGTAAGGTACATAATGATGGATCACCAAATTCAGCCTATGGCCACAAGGATACAAAACTACAAATGGACCATAAGGCAGAAAGGGAGTTGGAACCAAACACAGAGTCCGATCATGTAAACATATATTATCACGAATCTTTTTCGCAATGCCCTTATTGTCCTGACATTTTAAACCCTGAGGAGCGTCTTAAATTTCACATTGAGAACGGACATTTTCAAAGTCAGCTTCAACAAAAAGTAGGCCTCGATAATTTAGCTGGTAGTAGGTCAGAAAAACCACTGAATCTCTCCCATTTACCAACAACACACTCCACTTCACCCGTAGATTTTGTAGTAGGATCTATAATGTCCGAACTTCGAAATAAACCTGATGATAAAATCCATGGGACCAAACCGCCAGTAGTATTACCACAGATCCTCGAGTCTGGGAATTCTGTCCCGCTCGTTGAGGAGAAAATTTCTCTACCTGGTTATATGCCTTTAGCGCCACATTTCTTATTGCCACTCATGTCACAAAATTCAATGATTAACGCCTCTCCTTCAATCACGCAGTCTCAAGGCCAAGTCCCTGGTACAGCTCCTATTCGAATATTCAATCCAGACGCATACTGCGAATTGTGCAATAAAGAATTCTGCAACAAATATTTTCTGAAAACACATAAAGCAAACAAACATGGTATCTATGTCGAAAGTCCGAGTACAACTGTCGGTGGCACTTCGATTCCTAGTCACCCATACCCGGCTCCTTTGATTCAAGTGAATTTAAATCTTTCCAGAATGGCATCTCCTGTGCCAGTTATACAAAACTCTAAACCACTGTCAGTCCCCCCCCAAATAGCCGACGCCTTGAACGTGAACAAGATACCTGGAAATGGACAGCTGAAAGCATTTTGTGATATTTGTCAAAAGAAATTTTGCAACAAATACTTTGTTAGACGGCATAAAACCAAGATCCATGGTATTGTCGATGACTCTCTCCTACCTTCAGGCAGCACGCCTTTTCCGAATTTACCAGACTACATTAGAAAGCAAGAAATCGACGAAAGGGGCAGTACATCAGCAGGTTCAGACACTGGATCAAATGTTCTCGAAACAGTCTCCAGCGACATGCCAGAACATATTTCGGAGCTGGAAGAACTTGGTGTGAGTTTGCACGAGAAACATGACAGCAATTTGCAAATAAAACTTAGTCCTGCGAATTCTGTCACAGACGAAGGCGTGGAAGCTTCAAATGTTAAAGAGGAACCTGAACAAGAGCCAGAAGAAGGACGATCCATTGGAGAGTGTGTAGACAATAGCTCGGGGAAATCTAACAAAAATTCCCCCCCTCCTTTTCAACAAAACCAAAAAGAAGTCGCACTATCTTCAGAAAAGTTACGAAAGTTGGGTGTCATTAACGCCGATGCATTTTGCGAGATATGCTGCAAAGAGTACTGCAATAAATATTTCTTGAGGACGCATAAGATGAAACGTCACGGAATTTATTTTTCAGACTGCGAAGGGAAAGAACTTAAGACCGGGAGCAGCGGCTGTGTTCCATGGAACCACAATCAGACGAGCCCATTAAATTTAATAGTAGGTGAGCAGGGTACGAACAGTTCAGATTCGGGTGGAAAAGTACGAAATGATTTCTCTGACAGCGATGATCCAGAATGTGATATATGTGGGCGGCGTTTTCAGAGCTTTTACCTGATGCAAGTACATCGAGCTTATCTGCATGTTACGGGGAATGAGAGGAAGGAAGGACAGGAAGATCCAGGGGGACATGATGTTAAATCTCAGGAGGATATTACTACAAACTGTAACGACGGAAATTTGTCTCAAATCAGAGACAAATCGACGGATGAAGTGGGACCTTTTAACAATAACAATGATGGGAACAGCAATGGTGGGAAAGATGCAATTAGTGAAGACCTTCAGAAACTTCAGACCATGATACTACAACTGAATAACCTCAATGTAAGTAAAGTGAAAACGTGTACAATCTGTAACAAAGTGTCTGAAAATCATTACTGTTTGACAGCACATATGATGGCCGAACACGGTATTCTAATGGAGGAACAAAGTGGCATTGAAGAACAAAAGCTTCCATCTTTAGAGATGACTGGCCTACCTCCTCTCATAGACACACATACGTATTGCTTCTTATGTAAGAAAGACTTCTTCACCCAGTATCAACTTAAACAGCACGTGGATGATTTTCACAACTGTAGCGTAAAGACGACAGTGACAGCAAATGCAATGATGAGTAACGTGATTAAAGAAGAGTTAGATGCGAAGTCTCCACCAGAGAAACCCCCGAGTCAGCAAGCGGTCCACGTAGGACCTGAAAAACGAATTTCTGTAACACCAACGAGCAGTTACTGTGAAATTTGTAACAAGGAATTGTGCAATAAGTATTTCATGAAGACTCACATGCAGCGTATGCATGGAATTGAGATAGAGAATGGGGCACAAATTGGCGGTGTTATTTGTGACATTTGCAACAAGGAACTCTGTAGCAAGTATTTTCTTCGCGTGCATAAACAGAATACCCATGGGATTATTGAAGATGCGTCGGCGGCTCACTCAGCGAGGGACAATGGGAACGGGCATAACATGCAGATTCAATTAGAGGGAGACCAGGCTTTGAAACCATCCGAGCTAAGTGACCTAAGTCATCGGTATTTCAGCCACTTTACTGAAGTTTGTTCAATATGTAATCGCCGCTTCAGAAGCACAAAGTGGTTGAAAGCTCACCTGTTAAACGATCATGGTGAAAATGGAGTAGAAAAATGGAAAGAACTTGAAAGTCAGTACCAATTAGTCTCCCAACAAGGAAAACATCAATTACAGACCAGCAGGGGTTCCGGTGCAGTAAATAACTCTTCCTCTGGTTCAGGGTCCACTTACAGCCCTACTCTGAAAATTCCGAACAACTGGAACAGTCAAGACCAAGATACTGGCTGCTCAAGACCGCCCAATTTGATGTCTTTAGAAGGCACAAGCGAAGGGGGTGGGCATCAAGTTTTTGCGAGTCTCTTCGGTTCCGGAGATTCCACAGTAAAGAGTTATCACTGTTCTTATTGTCCATTCACAACACCTGTTCTTGCATTTCTGTTTGTCCATGAAAGATCCCATGCAGGACTGTCTTCGAACCCGTTACCTAACCCAGCAAAACCGTTTCAGTGCCCTGTTTGTCTGCAAAGTTTTCTCCAGTCTGAAGTGTTCCAACACCACATCTTGACCCATCAGTTCTCAGGTGTTTTAAATCCATTCATTGTCCCTTCTCCGTCAGTTCCGTATCCACCACAAATCGGAAACATGCAAGAACGCAAGACGACTGTACAGCAACATTCTCCAAACAACGAAGAAAACGGAGACAGTATTAAGAACGAAAATTTGGAATGTGAAGTAATTGAAGAAGATTCGATTAATGCTGCTGGGGGAAAGTGTAAGTTCCGGTGTTCCAAGTGTTTTCAGCGCTTTAGATCTCGAGAAAATTGCTTGACCCACATTCACAGCAGGCACAGTTTAAATTCCACCAGCCCACCTGAAACAATAGCTTCCAGCTCCGTCGAGACAACTGCGATCAAGGTAATGCCCCAAGGTCTGTACAAATGTACTCGTTGTGGTTTCTCCTCCGTTCATATGGTAATTGTGAAGAAGCATATCAGAAGGGAACATATGGTTGACAAGAGTAATTTTGAACTGCGGGAAGAACCAGAAGCGGCGGAGTCATTATTGGAATTAAAGGAAGCTGCCACTGATGAAGTAAAGAAAAAGCTACAGGAAGCAGCCAGGAAGTCTCAAGTCCCTGCCTCTTATGCCGTCCCGCAGAATCAACCTCCTTTCTTAGACCAGTTCATCATGCAACCGTTCCTTTTGGAAGAGCCCGACGGAACTCCGAGTTCTGAGCAAGTACAACTACACCGAAAGTTTGTTCCTTCCCTTGTGTTCCTCCCGGTCAAGGAGAAACTTTCCGAGCCCCTCACAGTATCCTTTACACTAACGCCAGCTTAG
- Protein Sequence
- MSSTVVDSAGTGTGNGIKSAEYSDGEDSSNSGEELEHHDEEDIAPGSVIDTPTCKRPFQDSQTEPDQSQAKKRRKQSKPVRVFSLTEPSSDDEPEASNEGKVHNDGSPNSAYGHKDTKLQMDHKAERELEPNTESDHVNIYYHESFSQCPYCPDILNPEERLKFHIENGHFQSQLQQKVGLDNLAGSRSEKPLNLSHLPTTHSTSPVDFVVGSIMSELRNKPDDKIHGTKPPVVLPQILESGNSVPLVEEKISLPGYMPLAPHFLLPLMSQNSMINASPSITQSQGQVPGTAPIRIFNPDAYCELCNKEFCNKYFLKTHKANKHGIYVESPSTTVGGTSIPSHPYPAPLIQVNLNLSRMASPVPVIQNSKPLSVPPQIADALNVNKIPGNGQLKAFCDICQKKFCNKYFVRRHKTKIHGIVDDSLLPSGSTPFPNLPDYIRKQEIDERGSTSAGSDTGSNVLETVSSDMPEHISELEELGVSLHEKHDSNLQIKLSPANSVTDEGVEASNVKEEPEQEPEEGRSIGECVDNSSGKSNKNSPPPFQQNQKEVALSSEKLRKLGVINADAFCEICCKEYCNKYFLRTHKMKRHGIYFSDCEGKELKTGSSGCVPWNHNQTSPLNLIVGEQGTNSSDSGGKVRNDFSDSDDPECDICGRRFQSFYLMQVHRAYLHVTGNERKEGQEDPGGHDVKSQEDITTNCNDGNLSQIRDKSTDEVGPFNNNNDGNSNGGKDAISEDLQKLQTMILQLNNLNVSKVKTCTICNKVSENHYCLTAHMMAEHGILMEEQSGIEEQKLPSLEMTGLPPLIDTHTYCFLCKKDFFTQYQLKQHVDDFHNCSVKTTVTANAMMSNVIKEELDAKSPPEKPPSQQAVHVGPEKRISVTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKQNTHGIIEDASAAHSARDNGNGHNMQIQLEGDQALKPSELSDLSHRYFSHFTEVCSICNRRFRSTKWLKAHLLNDHGENGVEKWKELESQYQLVSQQGKHQLQTSRGSGAVNNSSSGSGSTYSPTLKIPNNWNSQDQDTGCSRPPNLMSLEGTSEGGGHQVFASLFGSGDSTVKSYHCSYCPFTTPVLAFLFVHERSHAGLSSNPLPNPAKPFQCPVCLQSFLQSEVFQHHILTHQFSGVLNPFIVPSPSVPYPPQIGNMQERKTTVQQHSPNNEENGDSIKNENLECEVIEEDSINAAGGKCKFRCSKCFQRFRSRENCLTHIHSRHSLNSTSPPETIASSSVETTAIKVMPQGLYKCTRCGFSSVHMVIVKKHIRREHMVDKSNFELREEPEAAESLLELKEAATDEVKKKLQEAARKSQVPASYAVPQNQPPFLDQFIMQPFLLEEPDGTPSSEQVQLHRKFVPSLVFLPVKEKLSEPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370585;
- 90% Identity
- iTF_00370585;
- 80% Identity
- -