Basic Information

Insect: Reticulitermes lucifugus
Gene Symbol: ci
Assembly: GCA_026260175.1
Location: JAKCWW010003778.1:10255-35179[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00047 0.047 14.8 0.3 3 23 266 289 264 289 0.94

2 5 0.1 10 7.5 0.2 1 23 297 324 297 324 0.84

3 5 0.00019 0.018 16.1 2.9 1 23 330 354 330 354 0.98

4 5 0.00061 0.061 14.5 0.3 1 23 360 385 360 385 0.96

5 5 7.8e-06 0.00078 20.5 0.3 1 23 391 416 391 416 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00047	0.047	14.8	0.3	3	23	266	289	264	289	0.94
2	5	0.1	10	7.5	0.2	1	23	297	324	297	324	0.84
3	5	0.00019	0.018	16.1	2.9	1	23	330	354	330	354	0.98
4	5	0.00061	0.061	14.5	0.3	1	23	360	385	360	385	0.96
5	5	7.8e-06	0.00078	20.5	0.3	1	23	391	416	391	416	0.97

Sequence Information

Coding Sequence: ATGTATTTATGCACAGGTTTGGGTCTCCCACCGGACTATCTGGGTTCACGTGCCCTGACCGAACTGCAGCCTCCCCCTTCTACTATTGGCAGCTCCGAGTTCCCGTTCTCCATAGACGCAAGTTCTCGGCTGACAAGTCCTCGACCTGGCAGCTTGCGCCAGAGTAGGAAAAGAGCCCTCTCATCATCTCCGTATTCGGACTCATTCGACATCAATTCAATGATACGCTTCTCTCCGAACTCTCTTGTGTCCATAGTAAATGGTTCTCGAAGCTCCAGCGCCAGTGGCTCCTACGGGCATCTTTCAGCAGGGGCAATCAGTCCAGCACTGGGGATGCACCCCGGCATGGCACCCCATCTGCAGCAGCTCCAAGCACATCTCCTCAGAACAGCTGCAGGGAGTCTGTTGCCTCCATTGCCCCCTCATCCTCAAGCACAGACACCAGCTCCAGGAGGGCTCTTCTCTTTACCTCACCATCCCTTGCAGCCTTCCACAGGACATTCCATATCAAAAACAGAGCAGTTATCAGGGGATGCATGCAAGAAGCTGGACTCTCCTGTCTCTAGTAGTGTGGTGGAAGCAGACACAAGTGCTGCAGGTGGGGGTGCTGCAAATCAGCGGAAAGCACGAATAAAGAGGGAACCTGTTACCAATAATGCTAATCCCACACATGCAGGCACTGGAGCTGTACCAGGAGGACTTGGTTCAGATTGTAGTAGCAGCAAATGTTCTCCAGGTGGTGCTGATTCTGGAGATCCTCTCAAAGATGAACCTGGAGATTTCATTGAAACAAACTGCCATTGGCGGGAATGTGGTCTTGAATTTCCTACACAGGATGACCTTGTCAAGCATATCAACAATGACCATATTCATGCAAACAAAAAATCATTTGTTTGCCGCTGGGAGGATTGTTCAAGAGATGAGAAGCCATTTAAAGCCCAGTACATGCTTGTGGTGCACATGCGGCGTCACACTGGGGAGAAACCTCATAAGTGTACGTTTGAAGGGTGCTACAAGGCTTATTCAAGGCTGGAGAATCTCAAAACACATCTGCGATCCCACACTGGAGAAAAACCATACATGTGTGAATATCCTGGCTGTAGTAAAGCATTTAGTAATGCCTCAGATCGTGCCAAGCATCAAAATCGTACCCACTCTAATGAGAAACCATACGTATGCAAAGCTCCAGGGTGCACAAAGAGGTACACAGATCCCAGCTCCCTGAGGAAGCATGTGAAAACTGTGCATGGTGCAGAGTTCTATGCCAACAAGAAACACAAGGGTCCAGGTGATGGTACTGAGGATGGCTCCAGTGGGACTGGTGGCCTGCTGGACAGCAGTCCACACAGTGAGGAGATGATGAGTGGGAAGACTGCCAGTCTGTCCAGTCCTAGTGTCAAGTCTGAGGAGGCCAGTTCACCTGCTCAACAGGGCAGTCCTCTGAGTGTCACTCAGCATGCTAACAACAGTTTAGATGAGCCAGTCAGCGACTCCAATGTCAGCACAACCAACCATGGTTTGGCAGCAGTGGAGGCAGACCAGTGGGTGGATGAGGGTGAAGAAATTGAGCTGCCAGATCTCCACCTTTCTGTGAGGGCTGTTGTGGGTGGCGGGTCAGACCCTATAGGACCACCATCAGATCACAGCTCACAGAGGATGAAGAGGCTTCAAGCGAAAGGTGTTGGCACATCACTGCCTCCACTGCCAAGTATTGCAGGTGGACGAAGAGGGCTTCATCTAAGTGACCTGCCCAAGCATTTCACTGATCTCAAGGTAGATGGCTCTAGGAGTACTGGCTCTGTGACACAGACCCAGTTGATTGACTTGCAGCTTAACTTGCCTCCTGGCCAGACAAATGCCCAGAAACAGATGCAGCAACAGGCCATTCTGCGACGTGACAGCAACTCCACAGTCAGCACATATTACGGCAGCATGTGTTCAGGAGAGCTGGGTTCAAGTCGACGCAGCAGCCAAGCTTCACAGGCATCAGCACTGTCGTGTGCGAGACCTGGAAGTGGACAGGTAGGCTCATCTTGCGACCCCATCTCCACCGGCAGCTCTAGACGGTCCAGTCAACTCAGCAACACAGGAGTAACCTGTATGGGTCACAATATGTCCCATATGTTGCCTGCTGGCATGAGCAGCCAGTTGCAGCGCTTACATACAAGGGTTCTTGGTGGACATCAAGATCCTCTCTACTGCACTTCTAACCTCGTTGTGCAGACGCAAAACATGTCACTGCAACAACAACGGCGTCAGCAGCAACAGCACCAACAGTATCATCACCACCATCGACATCACCACCACCATCATCCAAGCACTGGAAGTTGGTTGCCACAATCAGGAGGTAACAACAATTCCACCAACACAGTGGATAACCGACGGATGTCGGAACCATGTAGAGGGGAATCAGACAGATCTACACCCCCTCCACCTCGACCTCACAGTGTTGTATTGCCTCCCATTGCACGTGGCCAGGAGCACCATCCCAACCAAGAAGTGGTACTGGATGAAGTGGCTGAGGGAGAAATGGTAGAAAAAAATCTGGTCATTCCAGATGAAATGTTGCACTTCCTTAACCAAGTTGCAGATCATGGTAAGGATGAGAGTTCAAGCAGAACCACTGTCAGCACCACTAACAACGCCCAGGTGTTCCAGCCACCAGCCTGCAATAGCCACCAACAAGGAAACTTCCCTGGCAGCTATGCAGGGAGACAAATGCCATCTAATAACCCAGGAAGTCCTATAGCAGCTTATAATCCATCTGTACCTACCTATCCTCTCTCAGCTCCTTCCACTTGCTTTGCAGGTCAGTCCATTACAGCAAGCCCTGCACCTGGTAATACTGCATACTGTAATTCAATGCCAGTAGCCAACAGTCCAGTACAGGGGCCTCCCAGTATCATGATGGGTCAGTCTTTACCCATGAACAACCCACAACATAACAGTGGATTCAATAACACAATACCTATGGTGAATGGCCAATGTCCATCAATGATGAAAGGCCCAGGGTCATGTCAGCCTGTGGGCTACAATGGGTCATCCATGCCTGTGGTTAATAGTTCAGGCCAGTGTCAGCCCGTTATGGGCAGTCAAGGGCACTGTGATTCAATGCCAAATACTGCTCAAACAAACGTGCCTGGATTTATTGGTCCAATGGGACATAACCCAACACAGTGCCATTCTATGCCAAGTCCTGCACAAGCAAATGCTGGGTACCTGGGTCCTGCAATGCCAACAAGTCCTGCAAATTGCTATGGTGCTGGACGGCAGACCCCACAACAGCTAAGTCAGCAGCCTCTCACGAGTCCTGCTGCAGGAGCTCCTGCACCTCAGCAGGCTAGCAACTGCTGGCAGCAAAATCTACAGATGATGCAAGCAGCTCAGATGTCTCGTGGCAATAGTGTTTACCCCAGTGCTGCCCCTGTGCAGCACGGTGACAGCGTCAATCAGCAACCAGCTCAGTATAGTACTTGTTACCAACAGCAACCTCAGCAGGTGGGACCATGTGCAAACTGCACACACCATCAACAGTACCAGCAGCAATCTCATGGTAGCTGGAACAACTACAGCCACCAGATGCCTCCACCACCATACCAGCAGCGATCACAGCAGTTCACAAGTCCTCCCTGTATCACACAGTCACAACCTTCTCAGTGCAATAACACCAATCATGGATTCATGGCCCCTCCAGGTCCAACCTGTAACCAGCAACAAAATCGACCTTGTTCTAATAGTGGACATAGTGCTCACATGTCATATCAATCCCTTGTGAATAATAATATGACAGAAATTCAGTGTCAGGACATTAGCCAGTCATCCCCAAATAACGGTAGTGCAGTTCCAGTAAATCTGAATTCCACCAGTGTGCCAGTAGTTACAGGGAATGTACGAGGGATGAGGCAAGACACTTACCAGAGAACGCTTGAATATGTGCAACAATGTCAGTCATGGGCAGGCAGTGATACGGTGTCCAGCAGTACACATCCTTTAGGCACAGGACCAGAAGCTTCCCCTCATAAAGGTCCCTTACAAGGGTCAACATCGAATATGGTGATCAATGACATGACATCATCTTTAACCTCACTGCTGGAGGAGAACAGATACTTGCAAATGATTCAGTGA
Protein Sequence: MYLCTGLGLPPDYLGSRALTELQPPPSTIGSSEFPFSIDASSRLTSPRPGSLRQSRKRALSSSPYSDSFDINSMIRFSPNSLVSIVNGSRSSSASGSYGHLSAGAISPALGMHPGMAPHLQQLQAHLLRTAAGSLLPPLPPHPQAQTPAPGGLFSLPHHPLQPSTGHSISKTEQLSGDACKKLDSPVSSSVVEADTSAAGGGAANQRKARIKREPVTNNANPTHAGTGAVPGGLGSDCSSSKCSPGGADSGDPLKDEPGDFIETNCHWRECGLEFPTQDDLVKHINNDHIHANKKSFVCRWEDCSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCYKAYSRLENLKTHLRSHTGEKPYMCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGPGDGTEDGSSGTGGLLDSSPHSEEMMSGKTASLSSPSVKSEEASSPAQQGSPLSVTQHANNSLDEPVSDSNVSTTNHGLAAVEADQWVDEGEEIELPDLHLSVRAVVGGGSDPIGPPSDHSSQRMKRLQAKGVGTSLPPLPSIAGGRRGLHLSDLPKHFTDLKVDGSRSTGSVTQTQLIDLQLNLPPGQTNAQKQMQQQAILRRDSNSTVSTYYGSMCSGELGSSRRSSQASQASALSCARPGSGQVGSSCDPISTGSSRRSSQLSNTGVTCMGHNMSHMLPAGMSSQLQRLHTRVLGGHQDPLYCTSNLVVQTQNMSLQQQRRQQQQHQQYHHHHRHHHHHHPSTGSWLPQSGGNNNSTNTVDNRRMSEPCRGESDRSTPPPPRPHSVVLPPIARGQEHHPNQEVVLDEVAEGEMVEKNLVIPDEMLHFLNQVADHGKDESSSRTTVSTTNNAQVFQPPACNSHQQGNFPGSYAGRQMPSNNPGSPIAAYNPSVPTYPLSAPSTCFAGQSITASPAPGNTAYCNSMPVANSPVQGPPSIMMGQSLPMNNPQHNSGFNNTIPMVNGQCPSMMKGPGSCQPVGYNGSSMPVVNSSGQCQPVMGSQGHCDSMPNTAQTNVPGFIGPMGHNPTQCHSMPSPAQANAGYLGPAMPTSPANCYGAGRQTPQQLSQQPLTSPAAGAPAPQQASNCWQQNLQMMQAAQMSRGNSVYPSAAPVQHGDSVNQQPAQYSTCYQQQPQQVGPCANCTHHQQYQQQSHGSWNNYSHQMPPPPYQQRSQQFTSPPCITQSQPSQCNNTNHGFMAPPGPTCNQQQNRPCSNSGHSAHMSYQSLVNNNMTEIQCQDISQSSPNNGSAVPVNLNSTSVPVVTGNVRGMRQDTYQRTLEYVQQCQSWAGSDTVSSSTHPLGTGPEASPHKGPLQGSTSNMVINDMTSSLTSLLEENRYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01567408; iTF_00396878;
90% Identity: -
80% Identity: -