Rluc014330.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010005405.1:3106-23930[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0041 0.41 11.9 0.5 2 23 1030 1052 1029 1052 0.94 2 8 0.096 9.5 7.6 1.1 1 20 1317 1336 1317 1340 0.91 3 8 6.9e-05 0.0069 17.5 1.3 1 23 1376 1398 1376 1398 0.93 4 8 0.00028 0.027 15.6 0.1 2 23 1411 1433 1411 1433 0.91 5 8 0.00054 0.054 14.7 2.5 3 23 1441 1461 1439 1461 0.95 6 8 0.011 1.1 10.6 4.8 1 23 1467 1489 1467 1489 0.97 7 8 0.00013 0.013 16.7 3.7 1 23 1495 1518 1495 1518 0.98 8 8 0.12 12 7.3 0.3 1 23 1527 1549 1527 1549 0.94
Sequence Information
- Coding Sequence
- ATGAAAGTTGCAAAAAAGGAAGCACAGGGTACGAAAAGCATAAGCCAAAGCAATGTAGCAGGGAAGAAGTATAAAAACATTTCTTCAAGCAAAACTAAGCCAGGTGCAGAAATTGACCCAAATGGGGAAGCGCTGTCAGCCACTCCACATATTCAGCAGAAAGGGAAAGAGCAAGCAGAAATAAAACATGTGAATGAGGCTAATATTATTTCACTTGGTTGTCAGCAGGAGTCCATCAGTTTGTCAACTGAGACACCTGTTCTGTTGTCTAGCGATGGAATTTTGCGCCAGGCACTGTTAGCCTTTAGCTACTCTGGGCAGGAAGAAAAGACACCAAGAGAATCTGCTGGCAAGAAGAATGGTAGTGTACCTAAGGCTCAAACAGTTGCAGTCAGCGATATCAAATTATCATATTCTGCTCCTGGTCCGTTACCTCCAGAAAATTTACAGAAAACCTTGCCTCATGGAAGAACTCTTTCATCAAAATCGTTGTCACCAGGAACTGTTCTAACAGGGCCTTTGCCTTTGGGAAACTTACCCCTTGTTTCCCTACCACCAGTATCTTTCACATCGGAAGCATTTTCACTTGGAGGTCTACCACTTATGTCTTTAACATCAGGTCCTCTCCCTCCTGTTTCAGAAATTCCACGGCCTGGGAATATTCCTTCACTCAGTTGCTTATCTTCAGCATCTACCAGGAGTACAGTTTCAGCAGGTTCAGGCATTGTTACTGCCATGCCAACTTCTTTCAGTGGTGGTTCAGGCAGTGTACCTATTCTGTCTGAGATTCCAGCATATGAAGTTCCTCAACTTGGAACCCATTCTCTGAAGGTTCTAGTTTCATTGTCGGCATCAGTTCACAAAACCACTGAATCTCATGTCGTGACCCAGACATCTGCTCCTTCCAAAGAAAGTTCTGTTACATTAGTTTACTCATCAATACCAAAACTGGAACCATCCTGTTTTAGTACTCCTCACAATGTGTCCCAGAAGCTTGTTCCCCTTCCCCCAATGTCAGAAATGAAATCTCATCCTACTAGTCATCTGCAGACACTGTCACATGGCAAGGTTGGTGATTCTTCTGGTGATTCTCTGAATGACCAAAATGAGAGTGTTGGTGACACCATTCATGAAGTTGTACCTGTTAATAGTGATATTTTGACAGTTGCTGATTGCACGTCTCAGGCTAGTATCTCGTTGCTTTCATCAACAGTTTCTGATAGCCCCATCCATGGCAGCAGTACAAATCCAATCAAACTGGATGAAAATCAAGATTCTACAGAAGAACTAAGTCAAGTTGATCCAATTCAAAATGTATCTATTTCACATTCAGTAAATTTTCAAACAAATAATGCTTCATCACCTGATTTAAATCATATCATCATACCAGTTTCCAGTGGCATTACTTCTGGTAAAGTGGATGACCAGCATGTCTTGTCAGCACAGGATGTTGGCCAAATAATTACAATTCCATTAACGTCAAGTGCAATTTATGGCCACCCACTTGGTATCTCCATACCAATTTCTGGTAATGCAGTTCCTTTGTCCATGCCTCTACAAGTTTCTTCTAGTATTTTGCCCATGTCATGCAATTTACTGCCCGTTCCCATTAGTACAGCCACCATTCCTCCAGCATCTGTCCCTACTGAGACTTCACGCCTACTGGTACCAACTACAAGTTCTGCTCGATTATATCCTGGTACAGTTATTCCATCAGTTAGCCCAAATAGTACTACGGAAACAGCAGCCCAACATCCTCGCTTCTCGGCAGACATGTCCGGCTTAGTACCTGTAACTTCAAGCGTGACCTTGCCACTCTCAGCCACAAATACTGTGACATCAGTTACATCTGCATCCACTACCGGTCCCTCAGTTACTTCTAGCATCAATTCGGTACCAGTGACATCTGCCACTGTGTTGGTACCTtcatcatcaccatcgtcatcatcatcgtcatcaAGTACAACTACAACCCACAGCACATCTGTTGAGTCAGTTTCTGCCTATGCAATGCAGTCTCCAGCAGAAATCCTGTCACAGCTTTCAAAGGCTGGGGTACTTCCCACCATGAGCAGCAGTCAGGTGTCATCAGTATTGTCTGCTCTGGGAGCTGATGCATGCCACTTGGACTTGGAGTCTGAAAGCTCACATCATGCAGAGCTCATGACTCAACAACAGGTGATGCACCTATCGTCCTCTGCGGATAAGGTATCGACTCTGACACAGACAGAAGCTCTGGAGTTGGGCCATGCGGTGGAGTTGGGTTGCAACATCGATGTAGATATGCAACAGAACAAAGTGATCAATGTTCCAGAGGAAATCCATCTTGCAGGAGGTGGCAGGTTAATGGAGCAACACTTGCACCTCTTAAATGATACACATGGACGTTCTGGCACTGCTGCAACTTCTTTGCCTCCCACTGTTCCTGTTCCTCAAAAACAGGCTTCTATTTCAAGTCTTCCTTCCATAGATAGTACTGGGGTATCAGATGAAAATGTAATTGTCAAACATCACGTTGAGGTAAATCCTAGGGTAATAGGTCCTGTGGAAATGGACCCAAGTACTCTTAAACAGACACCACCTGTGTATCCTAGGATAGTTTCTAAACTTAATATGCATCCTAATGAACTTACAACTACAAATCAGATTAAAAGTAACTTAAGTCAGAATATTGACATGCCAAGACATGTAGGTGAATCTTTGGCAAGGTCCCATAGTAGTGATGTGAATTGTGAACAGCGGGCTGTTTCAGTGTTTGTTAAACAAGAGAATTTTGAAAATTCTCTAAATCAGAAAGTTAATAAAGCTGGGGGTGATGGCGCTAAAGATGGTACATCAAAGAAGCGGAAACTGCAGGACGTTAATAATGGGAAAGCTGCTAGTGAATGTACACATGCGAAGTGCAGTAAAGAAGCAAAGAAGAGCATTAAAGATCTGGAACTGGACAGTTATGTAGAACAAGTTGCTTGCTACAAATGTAAGTTTTGTCCTTTCCTGACACTCGAAAAGAGGGGGGTAGCAATGCATATTGAACTTGTACATGGTTCACAGTTACCAAGTAATGAACAGGAAATTAGGCACGACATTAAATGCCCTGGATGTAAAAATATTTTCTTTACTTCAAAGTCCCTCAGGGTTCACCTGTCACAAGATCACCAAGTGGGAGATGAGGAATTAAGGCCGTTAGTTGAAGTAGTAGTCAAGTCTTCATATGTGGATGCTAAAGCCAAAAATAAGTTTGATAAGAAAAGAAGGAAAATCAGGGTTAAAAATCACCCTTCTGAAATTTCTAATCCTGTTGACAATGAATGCAGTAATAGGAAAGGGATATCAAGTGTTACCAACAGTGTCACAGATGTGAGCTCTTTGGCTGCTCCTAATGTATTGGTGGATGAACACAACAAGATTCGAGTGAGGAACTTAAACAATGAAGCATTTCCAGAGCTTGACGATACTCCTGTCATCACCACTGCTGATGATGTTTGTGATGATGCTAGTCTGTGTAGCAATGATGAATCTGATGGCGATTTGAGAGAGGGAACATTGGTCATAGATGACAGTGCCGTGACGCAGCAGAAACTTGCGAAGATAACAGTGGAGGAAGGCTGTGAATTTAAGATGGTGAAGACTGATACAGAGCAGGTACCTGGTTTGGGAGCCGATTCTGAGGTAATAATTTGTAGTGCAGAAAGTAATTCTTTGGGCCAGAAGGCGCAGAGACTTGAACTTAAATCTCATCAAGGCACAACTCCATTAGCTAAGAGGAGACCAGGTCGGCCGAAAGGTTCTAAGAACATCCCAGCTAACGGCTATCGGAAATCATCTTCTGCCCGGAAAGAACTTGCGGAGAAAGAGTTAGGTTACAGATGTGATATAGACGGGTGTCCAGTTCGTTTGCGTTCCCACGACAACATTGAGTATCATCGCCGATGCCATCATGATGAGAAGTTTCTGTGCCCTGAATGCTCACAGGAAACTTCTCACTGGAAGTCACTTAGCACTCACCTTTGGCGTTACCATGTCATTGACATGGAACTCTTTGCTTGTGATCAATGCAACTATAAAAGCAACAGTTACAGCAAACTGATGAATCTACATCATCGTATCCATGGAGACGAGCGACCTTTTCTCTGTGATAATTGTGGAAAGGGATTTAAGAACCGAAAACAGCTGCGTAATCATAAGGTAATTCATGTGGCAAAACAGAAACAGAAATCTGGTCCACTTGGAGAATGTGATGTCTGTGGCCGTGCTTTCACCAATCCTCGAATGTTGCGGATTCACAAAGATAATGTTCATGGTAAATTGCGGCCGCATCTTTGTAACTTCTGTGGTTATTCTGCCTCGTCACGCAGCACATTGAAAATGCACATGCGTCTGCATACTGGTGAGAAACCTTTCCATTGTGATGAATGTGAGTATGTAACATCTGATCATAATTCACTTCGACGTCACAAGATGCGCCACTCTGGAGATAAGCCATACAAGTGTCCACATTGCCCCTATGCTTGCATTCAGTCCAGCACATATAAAGCTCACCTGAACACCAAGCACCCAGGTATGGAGACTGGGTTGATGTTTAACTGTGATTTGTGTTCCTTCCGATCTGTACGTAAAGACAACTACTTGGCTCATGTTGCAGAGCATAAGAATGGTTCGTGCCCTAATAACAGACATAGAAAGCGCAACAGTTCAAAACCACAGAGTGATTCACGTGAGAAGCCCCAACAAAGTGAAATTTCGTCCAGGTTGGAGAAATCTCGTCTTCCAACAGCCATCAACATTTCCCATATTACACCTGTGGAATCTGAAGAAGGCACATTACATGAGCATGCTGAATCTTCTGATAATGTACACATCATCTATGATGATAGTCCTGTGGAGGGCCTTCTTCAACAGTCTTCAGAGGAAACAGAGGGACAGTTTGAAGTGGAAATATCATCTGATTCGGTTATTCACTTGGTAGAAAACTTGGACACTAGCTGTGACACCAGCAGTCAGCATGTGGCACAAAACGGGGAGACACTTTGTGTGGCCAACATTGAGACAGTAACAGAGATGCCTTTGACACCAGAATTTGAAGCTGAGCAAATCACAGGGGACATTCAGGACATCAAAGAGCCTCAAGAACTTAAATTCAAGGTTGGAGAAGATATGGCTTCATAG
- Protein Sequence
- MKVAKKEAQGTKSISQSNVAGKKYKNISSSKTKPGAEIDPNGEALSATPHIQQKGKEQAEIKHVNEANIISLGCQQESISLSTETPVLLSSDGILRQALLAFSYSGQEEKTPRESAGKKNGSVPKAQTVAVSDIKLSYSAPGPLPPENLQKTLPHGRTLSSKSLSPGTVLTGPLPLGNLPLVSLPPVSFTSEAFSLGGLPLMSLTSGPLPPVSEIPRPGNIPSLSCLSSASTRSTVSAGSGIVTAMPTSFSGGSGSVPILSEIPAYEVPQLGTHSLKVLVSLSASVHKTTESHVVTQTSAPSKESSVTLVYSSIPKLEPSCFSTPHNVSQKLVPLPPMSEMKSHPTSHLQTLSHGKVGDSSGDSLNDQNESVGDTIHEVVPVNSDILTVADCTSQASISLLSSTVSDSPIHGSSTNPIKLDENQDSTEELSQVDPIQNVSISHSVNFQTNNASSPDLNHIIIPVSSGITSGKVDDQHVLSAQDVGQIITIPLTSSAIYGHPLGISIPISGNAVPLSMPLQVSSSILPMSCNLLPVPISTATIPPASVPTETSRLLVPTTSSARLYPGTVIPSVSPNSTTETAAQHPRFSADMSGLVPVTSSVTLPLSATNTVTSVTSASTTGPSVTSSINSVPVTSATVLVPSSSPSSSSSSSSTTTTHSTSVESVSAYAMQSPAEILSQLSKAGVLPTMSSSQVSSVLSALGADACHLDLESESSHHAELMTQQQVMHLSSSADKVSTLTQTEALELGHAVELGCNIDVDMQQNKVINVPEEIHLAGGGRLMEQHLHLLNDTHGRSGTAATSLPPTVPVPQKQASISSLPSIDSTGVSDENVIVKHHVEVNPRVIGPVEMDPSTLKQTPPVYPRIVSKLNMHPNELTTTNQIKSNLSQNIDMPRHVGESLARSHSSDVNCEQRAVSVFVKQENFENSLNQKVNKAGGDGAKDGTSKKRKLQDVNNGKAASECTHAKCSKEAKKSIKDLELDSYVEQVACYKCKFCPFLTLEKRGVAMHIELVHGSQLPSNEQEIRHDIKCPGCKNIFFTSKSLRVHLSQDHQVGDEELRPLVEVVVKSSYVDAKAKNKFDKKRRKIRVKNHPSEISNPVDNECSNRKGISSVTNSVTDVSSLAAPNVLVDEHNKIRVRNLNNEAFPELDDTPVITTADDVCDDASLCSNDESDGDLREGTLVIDDSAVTQQKLAKITVEEGCEFKMVKTDTEQVPGLGADSEVIICSAESNSLGQKAQRLELKSHQGTTPLAKRRPGRPKGSKNIPANGYRKSSSARKELAEKELGYRCDIDGCPVRLRSHDNIEYHRRCHHDEKFLCPECSQETSHWKSLSTHLWRYHVIDMELFACDQCNYKSNSYSKLMNLHHRIHGDERPFLCDNCGKGFKNRKQLRNHKVIHVAKQKQKSGPLGECDVCGRAFTNPRMLRIHKDNVHGKLRPHLCNFCGYSASSRSTLKMHMRLHTGEKPFHCDECEYVTSDHNSLRRHKMRHSGDKPYKCPHCPYACIQSSTYKAHLNTKHPGMETGLMFNCDLCSFRSVRKDNYLAHVAEHKNGSCPNNRHRKRNSSKPQSDSREKPQQSEISSRLEKSRLPTAINISHITPVESEEGTLHEHAESSDNVHIIYDDSPVEGLLQQSSEETEGQFEVEISSDSVIHLVENLDTSCDTSSQHVAQNGETLCVANIETVTEMPLTPEFEAEQITGDIQDIKEPQELKFKVGEDMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -