Rluc020847.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010002842.1:20417-34433[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.015 1.5 10.1 2.3 1 23 190 212 190 212 0.98 2 23 0.0013 0.13 13.5 2.9 1 23 214 236 214 236 0.96 3 23 0.0083 0.83 10.9 2.8 2 19 243 260 242 265 0.88 4 23 0.0036 0.36 12.1 6.3 1 21 271 291 271 293 0.94 5 23 0.0087 0.87 10.9 1.2 1 23 299 321 299 321 0.96 6 23 0.0069 0.69 11.2 5.3 2 20 362 380 361 382 0.93 7 23 0.17 17 6.8 7.2 1 23 413 435 413 435 0.97 8 23 6.8e-05 0.0068 17.5 0.6 2 23 509 531 508 531 0.96 9 23 0.068 6.7 8.1 3.1 1 23 619 642 619 642 0.91 10 23 0.047 4.7 8.6 4.6 2 19 670 687 669 692 0.90 11 23 0.87 87 4.6 2.1 1 19 715 733 715 736 0.93 12 23 0.16 16 6.9 4.3 1 23 757 780 757 780 0.90 13 23 0.093 9.3 7.6 1.5 1 19 799 817 799 820 0.97 14 23 0.35 35 5.8 4.9 1 23 840 863 840 863 0.96 15 23 0.73 73 4.8 2.3 1 19 882 900 882 903 0.95 16 23 0.35 35 5.8 7.5 1 23 924 947 924 947 0.94 17 23 0.096 9.6 7.6 2.2 1 19 989 1007 989 1010 0.97 18 23 0.018 1.8 9.9 2.2 2 23 1032 1054 1032 1054 0.96 19 23 0.24 24 6.3 2.4 1 19 1073 1091 1073 1094 0.96 20 23 0.0019 0.19 12.9 0.8 1 23 1115 1138 1115 1138 0.97 21 23 0.0013 0.13 13.5 1.0 2 23 1178 1200 1177 1200 0.91 22 23 0.1 10 7.5 0.4 1 21 1376 1396 1376 1399 0.89 23 23 0.4 40 5.6 0.5 3 23 1426 1447 1425 1447 0.88
Sequence Information
- Coding Sequence
- ATGGATTTTAACGTGGATGTAATGTGCCGACTGTGTACGAGAGCACAGTACACTATGCAGCCGCTGTTTGGTGGAAGTGAGGACTTGCCTGCCAAAATCAAGATTCTGTCACCATGTATGCAGATGTATGCAGGGGATGGATTGCCCAACCATATATGTGAGGTTTGTGTCAGTAAAGTGAATTCATTTTGTAAATTCAAATTGATGGTTGAAGTTGCTGACTGCAGCTTACGAGATTTAATTAGGAGGCAGCAGGAGAGACAATCTGACCAGGTTGTGTTTATCAAGGAAGAAGATATATCCAGTCAGGGTACTTACACAACTTCTGTTGTCATGGACGTTCAGGCTGAGGATATCTTCAGTGAAGTGGAGGATCCATTGCTTATCAAACAAGAACATGATACAGATATGGTTGTTGACATGGCTGCAGAATATCTTTCTGATAGCAGCAACAAAAGCAACCACCACCAACACCCTGCTGAAGGAGCAGACATGAGTACTGACAACAAACCAGTTCCATCAATACCGCAAGGTTCCATTTTATCTCATATTTCAGAGCAACATCTGTATGAATGTAGCACGTGTGCTAAAAAATTCAACACATTTCATGGTGTGAAGATTCATGCTAGAAGTCATGGCTATGAATGTATTACTTGCAATAGAAAGTTCAGTAGTTGGCGACTGTATAGGACTCACCGACGTACACATACAGAGGGACTCGGTTTAGAATGTCCTCTCTGTAATAAGAGATTTAACAGTCAAAGGGGTTTGAAGCTGCATTGTTCAAGATACCACAGCAACAGAAGGCCCTTTGAGTGTAACGTATGTAAGAAAACATTTGATACAAAACACAGTTTGAGGATGCATAGCAGATGTCATTCTGAAGAACGTCATCATATATGCCTTTTGTGTAATGAGACATTCAGCACAGGCTTAGGCCTTCGACTGCATACTCGAACACATACTACGTTTGATATTTCTCCAAGCCCAGAAGGGAATACATTAACTCAACACAATAATCCAAGCCCAGAAGTGAATACATTAACTCAACACTGTAACGTCACTTTGTTAGAATTTCTATGTGAATGTAATTTTTGCAAGAAGAGGTTTCCCAACTTGAAAGAGCTTAAGAGACATCAACATTTTTGCAAGAGTAAGCTACCCAATGAAGTACCAAGCATGTCCACAGTTTCTGGACAAGAGTTACCAATTGAAACTCCAGGGAAGCAGGCAGATCATGAATGTCAATTTTGTAAGAGAACATTTACAGATCGGCGATCCCTTAGTTGCCATGTACGGTCTCATAACAGAGTTTCTTGGAAATGTACAATTTGTATGAAACGTTTCAGAGATAGGAGAGGTCTCCAGTGCCACACAAAATGTCGTCATTCTTGTGTGGCTGGTAGTATATCAACAGGAAACCAGGTTCTTCATAGTGATTCTCAGTCAGTCTTTGAAATCACTTTAGGTAGCAATTCTAGAAATGAATCATTACCTTGTGCAAACAGTCTTGCAGTAGAAAGTCAGTGTACTATATGTAAAATAGTTTTTAAGAATGCAAGAGGTTTAAGAACTCATATGACCAGAATTCATAAACAGGAGACAGAGCAGACAGCAGTTATGGACAGTTCTGGGACACCTAATACTGCCAGAGTTAATGAAGATAATCTGATATGTGCTGTTACTCAGGGGATAGTGAAGAATGTACGTAGTTTAAGATCACATCGTTGGAGATTACACAGGGACGATGACTCACATTTGCTTCCACCTGACATTCTTCAGGAACAGGTCAGCAAATTGACAGGAAATACAGTACAAGATGATGCTGAAGACAACCAAATTCAAGAGCAGCATCACATCTGTCTAAACTGTGATAAGAGCTTTCATAGTAAACGGGGTTTACTGATGCATAATATCAAGTTACACAAAATAAATTGTTCTCGAAAGAGCATGGGAAACACATCCGTAGGTGCAGTTATTGATGCTGATAGTGCTGACAGAGACAGTCGCTGTCATATTTGTGATAAAAGCTTTCATGATAACAGAGGGCTGCTAATACATTGTACTAAAATTCACAGAGTAAGCAGTATTGAGTGTCTCATTGCCTCACAAGAAGCAGATGATAATGGTTCATTTAGCCATTATGAATGCAAGGTTTGTAATGAGAAGTACACTAAAGTGAATGGTTTCAGAGTTCACTGTACGAGGCAACAACACATGGTACCAGAGAATGTTGTACAGCAGGCTGAAGGTAACAATGTTGATGTCCATGAATGCCCATTATGTAACAAAAAGTTCTTTTCTGCGCATGGTTATAATTATCACAGTTTCAAAGCTCACAGAGGAAGCACTGGTAAGGGAGTTATTTCATCACAATATAGTGCATCAGGCCGTTATGAATGTGAAGTTTGTAATGAGAAGTACAACACCCTAAAAACTTTCAGAGTTCATTGTGCAAGACAGCAACACATGGTACCAGAGAATATACAGCAGACTGAAGGCAACAGTGCTGCTGTTTATAATTGTCTGATGTGTAACAAGAAGTTCTTTTCTGAGCATGGTTATAATTATCACAAGTCCACATCTCACAAAGGAAGCACTGATGATAGTGCCATTTCATCACAAGATGATGCGTCAGGCTGTTATGAATGTAAGGTCTGTAATGAGAAATACAGTAAAGTGAAGGGTTTCAGAGTTCACTGTACAAGACAACAACACATGGTACCAGAGAATGTTGTACAACAGGCTGAAGACAGCAATGCTGATGTTCATGAATGTTCACTGTGTAACAAAAAATTCTTTTCTGAGCACAGTTATAATCATCACAGTCTGAAGGCTCACAAGGGAGACGATGTGGGTGCCATTTCATCAGAAGATTATGCGTCAGGCTGTTATGAATGTAAGGCTCACAAAGGAAACCCTGATATGGGTGACATCTCATCAGACAATGGTGCATCAGGCTGTTATGAATGTAAGGTTTGTAATGAGAAGTACAACACCCTAAAAACTTTCAGAGTTCATTGTGCAAGACAACAACATATGGTACCAGACAATGTTGTACAACAGGCTGAAGACAGCAATGTTGATGTTCGTGAATGTTCACTGTGTAACAAAAAGTTCTTTTCTGAGCATGGTTATAATTATCACATTCAGAAGGTTCACAAAGGAAACACTGATGTGGGTGCCATTTCATCAGAAGATGGTGCATCAGGGTGTTATGAATGTAAGGTCTGTAATGAGAGGTACACTAAATTGAAGGGTTTCAGAGTTCATTGTACAAGACAACAACACCTGGTACCGGAGAATATTGTACAACAGGCTAAAGACAACAATGTTGACATCTATGAATGCCCACTGTGTAACAGAAAGTTCTTTTCAGAGCCTAGTTATAATTCTCATCGTTTAAGGGGCCATAAAGGTCTTTCTTCTGTAACTGAAAACATAGCAAATGTACATGCCTGTACTCCACAAAATGCTACAAGTAATTTACAGTGCAGTAGTCAAAGTGGCAATTGCCCTGAAGTCTACTTATCATGTACTTCATGTGGAAAATACTTCAATAGTCCAGAAAGTTTGAAAATTCATTATATTGCATGCCATAGTGAGGTTTGTACAGTGCAGAATCAAATAAGAGGGGAAACTCTACAGACTGACAACACTCATTCAGGTTCTACTTTTGAATGCTGTAACAAGCTGTTTCTTTCTGAAAGGGGATTGAAGATTCATCAGGCCAGGTATCACAAGGATTACCATTTGAATGAGAACTCTTTTAGAGAAAACCATCATGTATGTATGAGGGATGGCAGCGACACTGCATTTTTAAGTGCGAGTGATCCAACTTCTCATACAGTAGCCCGTTCAGAAAGGCTTACTGAAGATAGAGAGAATAATGAACTGACTCTTACACATCAAGATATTGAATTAGATTTTACAAGTGTTGCAAAAGATCAGTTATATAGATGCTCTTTCTGCAGCAGATTATTTTCATCAGAACAAGGTCGAAGACTCCACTGTAGAAGGATGCATGAGGGTGCAAAGATGTTGACTTTTTTTTATGTTAGTAATGATGACAACACAGTCAACCCTCCAAATATGAAGGTGGCATCTTCAACAAAAGATGGTCCATTTGAATGCTCATTCTGCAGCAGTGTATTTAATAATGAAAAGGGTCTCAAAATTCATAGTGCAGAGAACCACAGGAATGAACTGTTACATGTTAGGAGTGTTGAATCTCTTAATGGTGTGATGAACCCTGAAGAGCCTTCTGGCACATTATGCAACGTTTGTAATAGGACATTTGACAGTGAGGAAGCTCGTATACTTCATTTCAGTAAGAATCATGCAGATTCTCTTACAAACTCTATGATTATTCCAGCATTCAGTACCTGA
- Protein Sequence
- MDFNVDVMCRLCTRAQYTMQPLFGGSEDLPAKIKILSPCMQMYAGDGLPNHICEVCVSKVNSFCKFKLMVEVADCSLRDLIRRQQERQSDQVVFIKEEDISSQGTYTTSVVMDVQAEDIFSEVEDPLLIKQEHDTDMVVDMAAEYLSDSSNKSNHHQHPAEGADMSTDNKPVPSIPQGSILSHISEQHLYECSTCAKKFNTFHGVKIHARSHGYECITCNRKFSSWRLYRTHRRTHTEGLGLECPLCNKRFNSQRGLKLHCSRYHSNRRPFECNVCKKTFDTKHSLRMHSRCHSEERHHICLLCNETFSTGLGLRLHTRTHTTFDISPSPEGNTLTQHNNPSPEVNTLTQHCNVTLLEFLCECNFCKKRFPNLKELKRHQHFCKSKLPNEVPSMSTVSGQELPIETPGKQADHECQFCKRTFTDRRSLSCHVRSHNRVSWKCTICMKRFRDRRGLQCHTKCRHSCVAGSISTGNQVLHSDSQSVFEITLGSNSRNESLPCANSLAVESQCTICKIVFKNARGLRTHMTRIHKQETEQTAVMDSSGTPNTARVNEDNLICAVTQGIVKNVRSLRSHRWRLHRDDDSHLLPPDILQEQVSKLTGNTVQDDAEDNQIQEQHHICLNCDKSFHSKRGLLMHNIKLHKINCSRKSMGNTSVGAVIDADSADRDSRCHICDKSFHDNRGLLIHCTKIHRVSSIECLIASQEADDNGSFSHYECKVCNEKYTKVNGFRVHCTRQQHMVPENVVQQAEGNNVDVHECPLCNKKFFSAHGYNYHSFKAHRGSTGKGVISSQYSASGRYECEVCNEKYNTLKTFRVHCARQQHMVPENIQQTEGNSAAVYNCLMCNKKFFSEHGYNYHKSTSHKGSTDDSAISSQDDASGCYECKVCNEKYSKVKGFRVHCTRQQHMVPENVVQQAEDSNADVHECSLCNKKFFSEHSYNHHSLKAHKGDDVGAISSEDYASGCYECKAHKGNPDMGDISSDNGASGCYECKVCNEKYNTLKTFRVHCARQQHMVPDNVVQQAEDSNVDVRECSLCNKKFFSEHGYNYHIQKVHKGNTDVGAISSEDGASGCYECKVCNERYTKLKGFRVHCTRQQHLVPENIVQQAKDNNVDIYECPLCNRKFFSEPSYNSHRLRGHKGLSSVTENIANVHACTPQNATSNLQCSSQSGNCPEVYLSCTSCGKYFNSPESLKIHYIACHSEVCTVQNQIRGETLQTDNTHSGSTFECCNKLFLSERGLKIHQARYHKDYHLNENSFRENHHVCMRDGSDTAFLSASDPTSHTVARSERLTEDRENNELTLTHQDIELDFTSVAKDQLYRCSFCSRLFSSEQGRRLHCRRMHEGAKMLTFFYVSNDDNTVNPPNMKVASSTKDGPFECSFCSSVFNNEKGLKIHSAENHRNELLHVRSVESLNGVMNPEEPSGTLCNVCNRTFDSEEARILHFSKNHADSLTNSMIIPAFST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -