Basic Information

Insect: Reticulitermes lucifugus
Gene Symbol: -
Assembly: GCA_026260175.1
Location: JAKCWW010000754.1:1682-10486[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0029 0.29 12.4 0.7 2 22 286 306 285 306 0.95

2 10 3.2 3.2e+02 2.8 6.6 1 19 314 332 314 336 0.90

3 10 8.7e-05 0.0087 17.2 1.5 1 23 342 365 342 365 0.95

4 10 5.7e-06 0.00057 20.9 0.1 1 23 371 393 371 393 0.98

5 10 3.2e-05 0.0032 18.5 0.1 1 23 401 423 401 423 0.98

6 10 3.4e-06 0.00034 21.6 2.5 1 23 429 451 429 451 0.97

7 10 2e-05 0.002 19.2 5.5 1 23 457 479 457 479 0.95

8 10 0.0015 0.15 13.3 2.2 1 23 485 507 485 507 0.98

9 10 0.002 0.2 12.9 2.0 1 23 513 535 513 535 0.98

10 10 0.00023 0.023 15.9 2.2 1 23 541 564 541 564 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0029	0.29	12.4	0.7	2	22	286	306	285	306	0.95
2	10	3.2	3.2e+02	2.8	6.6	1	19	314	332	314	336	0.90
3	10	8.7e-05	0.0087	17.2	1.5	1	23	342	365	342	365	0.95
4	10	5.7e-06	0.00057	20.9	0.1	1	23	371	393	371	393	0.98
5	10	3.2e-05	0.0032	18.5	0.1	1	23	401	423	401	423	0.98
6	10	3.4e-06	0.00034	21.6	2.5	1	23	429	451	429	451	0.97
7	10	2e-05	0.002	19.2	5.5	1	23	457	479	457	479	0.95
8	10	0.0015	0.15	13.3	2.2	1	23	485	507	485	507	0.98
9	10	0.002	0.2	12.9	2.0	1	23	513	535	513	535	0.98
10	10	0.00023	0.023	15.9	2.2	1	23	541	564	541	564	0.97

Sequence Information

Coding Sequence: ATGGCTCCGTGTGAGAAGTCTATTGCGGATTTTTGTCGGCTTTGTGCCGTAGAAGCTAAAAATGGTGTTGTTATATACAGCTCCGAAGGCGTTAATTTGTGTCTTGAAGAGAAAATCATTCAGTGTTTGAGGATAGAAGTCTCTAAAGATGATATGTTGCCAAAGAAGGTGTGTAGGCCTTGTCGTGCACGATTAGAAGACTATCACAAATTTGCGGAAAGAGCCAATCGGGTACAGCATACTTTAGAGCTTCTTATTCAAATGAAGAGCACCAACGTGTCCTCAGGACCACTGGTTGCAGAAACAAAGAATGAAGACGGAGTTCATGTAAAGAAGGACCCTGATGATATTGAGATTAAAGATGAATTAATGGAGCTTCCCCTAGATGTCACTCTGGTATCAGATGGTGATTCTCATGTTGATACTAAAGTCAATAGTACTGATGATGATCACAGTATACCTGAGCTACTTCCACTACCACATATTAGAGAGTCAAAACATGGTAGTATCAATGAACGACCCATGCGTCTTACCAGAAGAAGAAAAATGCTACAGCCCAAGAAAAGTTCACATCAACAGCCAGTAGTTGCAAGACGCAGAGGACGTTCACGGCGTAATATACCACGTCCTCCTCCCAGTTCTGAAGAGGACAGTGAAGATGAAGTGAAAGATGAAAAGACAGATGAAGATGGTGATGAGGATCCTGAGGAACTGGAAAAAATTGACCCAGATGAGATTGATGAACTCAATGTGTTTAAAGGTCTCAGGGATGAAGAAGAAGAAGAAGAGGATGAAGAAATTGATGATGAAGCAGATAAAAATGCAAAAGAAGAATGGAGAACACATTGGGGTATTAAGTGTAACCAGTGTGAACAGATTTTTCCGTTCAAGTCACAGTTTGACAGGCATTACCGTAGCTTGTATGAGAGGAAACCCATCTACACATGCTCTTACTGCAATAAGACTATGGAGAAGTATTCCACTTTCAGGTCTCACTGTTACCGCCATGTCACTGAAGGCAGATACAGATGTGAGTACTGTCAGAAGGGCTTCAGTTTGCGAAGCATGCTTCATGTACATATCCTAGCAAAACATACAACAGTGAAACCCTTCATTTGTGAAGAGTGTGGTAAGGGTTTTGTGACCCGGCCTGGGCTGAATATTCACCTCAAGAAGCATAAGACTGATGAAAAGCTGGAGTACCCATGTGGAGACTGTGGCAAAGTTCTTCATACAAGAGGAGGTCTTACAGCACACCAGAATGTACATAAACTGGGACGCCGATTCATGTGTGATGTATGTGGCAAGACATTTACACAAAAAGTGAACATGCAACAGCATGTGAAGCATCATACAGGTGAACGTCCCTTTGCCTGTGAGAAGTGTGGTAAATGCTTTGCAGAAAAGTCGCATTTAAACCGTCACTACAGTTTCCATAGTGAGAAACGTCCATTCCAGTGCACAGTATGTCTTAAGATGTACAAAACAGAACGTTGCCTAAAGGTACATGCCATGGTTCACGCTGAGGCACGGCCATATGTCTGCACATACTGTAATAAGGGCTTCCTCAGTACCACGAAACTCAAGCAACATTACAACATCCACACGGGAGAGCGCCCATATGCTTGTAAGTTTTGTGAACGCACTTTTACCAACTACCCAAACTGGCTTAAACACACACGGAGAAGGCACAAAACTGATCCTCGTGGTGGTGGAATTGGTGCATCTCGGGTGGTTGTACAAAGTCAGGAAGGACAACATCAAGGGTTAATTCCATTACAACAGCTAGAGGAAGTTCCACATGAAGATGAAAGAGGAAGTGTTAGCTGTCACACACCACAGTCACAGCAACCGTCTGGTCAAGTGATTCCTGTGGCCTGTCTGACAAACAATGCGAACCCTAACACAGGTTCTGGTATGAGCTTAATGACATCATATCCCCACCAGTCCCAACAGCCACATCCTGCTCACCAAACCCATCATCAGTCCATGACCTCTGAATCAAGAATGCACACTTCTATACCTCTTACCCAAGTCCAAGTGTATCCTGAACACATGATGACCATTCCTATAACACACCATCACCACATGCTTCCCCTCTGA
Protein Sequence: MAPCEKSIADFCRLCAVEAKNGVVIYSSEGVNLCLEEKIIQCLRIEVSKDDMLPKKVCRPCRARLEDYHKFAERANRVQHTLELLIQMKSTNVSSGPLVAETKNEDGVHVKKDPDDIEIKDELMELPLDVTLVSDGDSHVDTKVNSTDDDHSIPELLPLPHIRESKHGSINERPMRLTRRRKMLQPKKSSHQQPVVARRRGRSRRNIPRPPPSSEEDSEDEVKDEKTDEDGDEDPEELEKIDPDEIDELNVFKGLRDEEEEEEDEEIDDEADKNAKEEWRTHWGIKCNQCEQIFPFKSQFDRHYRSLYERKPIYTCSYCNKTMEKYSTFRSHCYRHVTEGRYRCEYCQKGFSLRSMLHVHILAKHTTVKPFICEECGKGFVTRPGLNIHLKKHKTDEKLEYPCGDCGKVLHTRGGLTAHQNVHKLGRRFMCDVCGKTFTQKVNMQQHVKHHTGERPFACEKCGKCFAEKSHLNRHYSFHSEKRPFQCTVCLKMYKTERCLKVHAMVHAEARPYVCTYCNKGFLSTTKLKQHYNIHTGERPYACKFCERTFTNYPNWLKHTRRRHKTDPRGGGIGASRVVVQSQEGQHQGLIPLQQLEEVPHEDERGSVSCHTPQSQQPSGQVIPVACLTNNANPNTGSGMSLMTSYPHQSQQPHPAHQTHHQSMTSESRMHTSIPLTQVQVYPEHMMTIPITHHHHMLPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00396724;
90% Identity: iTF_00370468;
80% Identity: -