Basic Information

Gene Symbol
-
Assembly
GCA_026260175.1
Location
JAKCWW010000556.1:12806-66383[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0044 0.44 11.8 2.1 1 23 177 200 177 200 0.92
2 21 1.4 1.4e+02 3.9 1.0 1 12 205 216 205 228 0.88
3 21 6.4e-05 0.0064 17.6 2.2 3 23 385 406 383 406 0.96
4 21 8.3e-05 0.0082 17.2 0.5 1 19 478 496 478 498 0.93
5 21 3.4e-05 0.0034 18.4 2.9 1 23 768 790 768 790 0.99
6 21 0.00021 0.02 16.0 0.7 1 23 796 819 796 819 0.97
7 21 0.099 9.9 7.5 0.1 1 14 825 838 825 839 0.89
8 21 0.00055 0.055 14.6 0.8 1 23 977 999 977 999 0.99
9 21 0.053 5.3 8.4 0.2 1 12 1005 1016 1005 1019 0.89
10 21 0.17 17 6.8 1.8 3 23 1070 1091 1069 1091 0.91
11 21 0.88 87 4.6 1.7 1 23 1096 1119 1096 1119 0.93
12 21 1.5 1.5e+02 3.8 0.0 7 21 1153 1167 1149 1168 0.94
13 21 0.0024 0.24 12.7 1.3 1 23 1202 1225 1202 1225 0.91
14 21 0.00034 0.034 15.3 1.3 2 23 1311 1333 1310 1334 0.94
15 21 4.5 4.5e+02 2.3 1.3 1 23 1481 1504 1481 1504 0.78
16 21 0.08 8 7.8 0.6 2 23 1671 1693 1670 1693 0.93
17 21 7.3 7.3e+02 1.7 0.0 10 23 1760 1773 1757 1773 0.90
18 21 0.00025 0.024 15.8 4.8 2 23 1843 1864 1842 1864 0.96
19 21 8.9e-05 0.0088 17.1 4.4 1 23 1913 1935 1913 1935 0.98
20 21 0.00032 0.032 15.4 3.5 1 23 2000 2022 2000 2022 0.98
21 21 3.6e-05 0.0036 18.4 2.9 1 23 2074 2096 2074 2096 0.97

Sequence Information

Coding Sequence
ATGGCAGAACACTGTGCAACGGTGGCTACACAGGAGGGAAGCAACTTGTACTGGGTGGAAATACGTGCTCTAGTTCTAAGGTGGAAGAAGACTGTTGACAAAGATGGAGACTACATTGAAAAGTCACATGGATTTGGAAAAACTGACTTCAAACAAGCAGCACCATCCACGTTGCAAGCCTTTGGTAACTCAGACATTTTACATTCTTTGCAAGTTGACAGTCCTGTTAAATCTGAAAGAGCAAATGAACAGTTGTACTCAATTTGGATAAAGACTGATGATGATGATGAGGAATACTATTTATGTGATGTGAAGGAGCTTGAAAATGATGTACAAGTCACAAAAGCTGCATCTGTTGATGCTCCAGATTATGTATTGGGAGAGGAATCAGCAAGCCAGCATCATATAGAATGGAACACAAATGCAAGGTTTCATCAACACATTCCTCACAGTGCAGATAAATATTTTGAACTTCAAAGTATGTTTGGGAAGTCAGAAGATAATGAAGATGTCGGAATACCAGATAGACATGTATGCAGCTATTGTCAGAAGTGTGTTGGGAATAAAAGTGATTTGCTGTCTCATTTATCAGATGCTCACTCTGATGGTGTATTCCATTGCAAGGTGTGTGATGAAAGATTTTGTACCATCAGGGAAGTCTTTTTGTCACATTTGGCTGTGCATGGTATAGAGCTATCAGAGGAGGATGTTGAAAATTACAAAGATCTGTTTGGGTATTCCTTTGTGCAACTTGAAGCTGAATGTGAGTTAAATTTTGATAGTAAGGAACTTGATAAACATAGTGATGCGTGTAGATGTGTTCATTGTGGTTTGACATTACAAACGGGGGAATTTATGAAAGGCCATGATAAGGTGCATAGGACCAAGAAGCTAATGATGACTGTGTTGAGGCGCTTTGCAGAAACGAAGAGTCGTGACAACGTTCATGCTGGCGAACATCCCTTTGAATGCAAGTACTGTGGAATTGGGTGTCAGCTGTCTCCTCATACATCATTCAAAGCTTTCCAAGAAGCAAAAAGTGCATTGAAGCACATGTACGGGCAGAAGGACACCATGTCTACCATTTCTGATGTATCGTCTCATCAGTTGGTGTGGGTTAAATGTGAAGAGAACACCAGAAATTTACAAAACTGTCATTATTGTAACACTTCATTTGCAACCAAAAATGAATTGGAGATTCACATGTCTAAATCACATCCTGATACGTATCATGTTAAATGTGATGCAGTAGTTGGGGTTCAAGATGAGCCTATTGCCAATTCAGATGCCTGTCTAGATACGGTTGGCAATGAAAGTGAGTGGTTGCATAATGCTGCAGTCAGTGTTGCAGGATCTGGCCGTGTTCCAAAAAAGGAGGTCAAAGTAACAAGACATTGTAGAAAAATTTTTCAGCATTCTGTGAAGAAGAATTTTCTCTGTAAAGTGTGTGAGAGAACATTTACTAGACAGTATGATTTAAAGAGGCATGCAGAATGTCACCCTCCACCAAGAACAGATAAAGTGGAAGAGAGAGAATTTGTGAATGAGAGTGATACAAGTGATGTGTTGGTGCAGTCAGAGTGGGATGAGGAAACAAAAATGGAATATGAAATGATGTTAGGTGAAGAGTTTGTAAAGAAAGGTAAAAGAAAGCGTTCAAGGTGTCAACAGCCTCTTCCTACAACATTCAAAGCATTCCAACAAAAGTCTGTACATAGTGAATCATGTACATTGAAGTACTCCAAACTGGAGGAGAGCAGAGCTGTCTTGAATGATCAGAGTACAGGAAATGAAGCACATAGTTCATACACTGCAAGTGGCAGGAGGAAAGGTAGACCATTCAAAGGACTGGAAGTACGCAATAGACTTACTTCTGGTCGCTCCAGAAGGACTGCTAATTGTAATCCGAGGTCTGCAGTGAGGCAGAAACCAAACGTAGAAGACACAGGAGAAAGTAAAGAGGACTTGGATAGTGAAAGTATGTGGTATGGAATACCCAATGATGATAGTGATGGAGAGCAGAAGCCAGATGTAGATGACTTGGATAGGTGGCAACAGTTCAGTGTTTACCAGCAATCACAGTATACATCAGAGAAGTACATGACGGTGTCACAGTGGTCAAGATGGTACCAGAGTGCAGGTGGCATCACGAATTATTAtaatggagacactgtatatgatgattatgatgatgatgatgatgatggtggtggtgttggtgttTTGTATTATGAGCAGGATGAAGGGAATGAGTTTAGCCCTAGAAGACATCCAGAAGGGGTTAGCGAAGATCGCCCTTTTTATGAATGTCATCACTGTGGCAAGAAACTGGCCTCAAGAGAAAATATGAAAGTTCATCTCAGAATTCATACTGGTGAACGTCCATTCACGTGTCATATATGTGGCAAGCAATTTCAGGCTCCATCAGGAATTAAGCGCCATCTGAGAGAAGTTCATGAGGGTGTGAAAGAGCATGTGTGTGACATTTGTGGCCGTGCCTTTGCAAACAAACGGACGTGTCTACAGTCTTCTTTGTCATCATTCAGAGCTCACCAAGAAGCAAATAATGCGTTTGGAAGTGTATGTCGGCAGAAAGGTTGTGCACCCCATCTGCGTTCTGCACACGTGTTTGCTTATGAATACAAGAAGGCAGTTATTAAAATGAAGGCCCACTCTAGTGAAACTGGCAGTGGACCAGTAACTGCAGGCAGCGACACATTTAGCACATTGTCAGTGAATGGTGAACATGTTAATGTCAGTGACACACGGCATCAGCCATGCTCTGTAACAAACGAAAGGCACCTTATGTTAAGGTCAGATGGGGGTGATTTGGAAGACACAGGAAGAACAGCCTTGAAGAAGGCAGCAGTCATGAAAAATGAAGCTATTGTGAAGAAAGATGCCAAGGTAAAAAGATCAAGCAGTGGTTTCCAGTGTGGACAGTGTGGGAGGAAAATAGCTACCAAGGATAAATTCAAGCTTCATCTTCGAATTCACACAGGTGAAAGACCATACACCTGTCATGTTTGTGGGAAACAGTTCCGTGTACCTGCTGGGTGTCAGCTGAGTCCTCTGGCATCGTTCAGAAATTACCATGAGGCATATCAGAGTGCATTGCTGGACATTATTCACCAGAAGAATACAAAAGACTTTGAAACTTCTGTTTATTTAAATAAATTTGAATGTTTCACTGAGACTGATGCGTCATGTAATTGCTGTGGAAGTATCTTCACTACAAGAAGCGAATTAGCAACTCACTTGTCATTGAGACATTCTGATTCATTATTTCACTGTGAGATTTGTGATGGAATATTTTGTGAAAGTAAAGCTTGGTTTATCAAACATATGGAGAGCCATGAGGACCAGCTTACAGCAGTGGCCACATCTGTTATGTGTGCAGAGAGAAGTAAATCTAATGCAAGAGAAAAATGTGGTACTTTTCCATGTAGATTGTTGGGTAGGATGTTTGTGAGGAAGCCAGAAATGACTAGACACATGAAAAGTAACCCTCAAATGACAAACATCTCTGAAACTATTCGTAATGGGAATGATCAAAATTTGAACAGCAAGTTGGAGAGTTGCATGCAAGAGGTGAAAGACAAATATCCTTGTAGTGTATGTGGTGAAGTTTTCACAACAAATTTTGGTGTAAAAAGACATTGTAAGAGTGTGCATTCTTTAAAATCATTACGAAATTGGTGTGCTAGTTCAAAAGGAAACGAAGAATTACAGCAGGTGTCAGAATCATATTCTAAACCTTCTTCAAACTGTGATGGACATTATGATTTCTCATGTACATGTGGAAGGGCTTTGGCAGGGAAATCTGATACTGTAAGAAACCAAAAACATATACACCTTGCAAAGAAGAGCAGTGATGGAGTTCATACAGAAGACATTAAGTCAGACCTGATTGTTTCGAAGGAAGAAATAACGTGTAGGATATGTGAACGTGTGTTCACTAGGAAGGCTGATGTGAAGAGACATGTTAAGAATGTGCATCATAAACAGCAAGATGGGAAACCAAGCGAGAGCTGTGGGGTTGACTTGCACACCACTGATATTTACCCCTCCCTGAATGACAGTGGGAACAGCAGTCTGATAGAAGTGAGAGATGTGTCATTAGATACGGAAACTGTGAGCAGGAGTAGGATGTACCGTACTGATGCCATATCACGTGCAAAAATTAAAGTCAATGGCAAGACATACTTCCATTGTCAAGTCTGTGGGAAGAATCTGTTTCGTAGGTGCACGTGTCATCTGTCTACACTGACAACGTTTAGGGAGTTCCAACAGGCACAAAGTGCATTGAAGAGCATGTACGACCCCATGGTGACCATTTCTACTGTATCTCAATCTGTCGATTGGGTTAAATCAGAAGATTACAACTTGGATGAACTGCAGGCAACCAAAACAGCTGAACAGCATGATTCAGTTGAGTTGTATCATTGTGACATTTGTGATGAGAAAATTAAAGGGAACAAACATGCCTTGGAGACTCACATAAAAGGCCATAAAGAATATAAGAGGACAGAAAAACGGATTGTGCGTGATTCAGACAGTTCAGAGCTAGGATTTGAACTGACACATTGTGAGTCTCCTGACAGTCATGGGCGTAGTAGTGGTGGTAAGAAGAAGAAGAAGAAGAAGAAGACAAAGACTAGATTGAAGAAGCTGAAGGTTGCTAAAGGTAAGCAGACTGTTTTAAGCCTTGAAGATGAAGACTCAGTGATCGGCAAAACATCAGGAACCACTAACCCAGTGACACAGTGCCACATCTCAGAAGACCTGAATTCTCAGCACCACTGCTGTGAGCACCTCAAATCTCGCGTTCTGCTATTTGTTTGCACTAGGAAGTGCCAACAGCCTCCTCCTCAGACTCCATTCAAAGCTTTCCATCATGCCCAAAATGAAATACGGAGCATGGCCCAGCCCAGGGATACCACCGATGGTTTGAGAGGCACTAATGGTTTGGTTAAGAATGAGTGTAATGATTCAGAAGATACATTGCTAACATGTGATTACTGTGGACAGACATCTACTGAGAAAGATGAGCTGATATGTCATATATCTTCTGTGCATTCGCTGGACTTAGGAAGTCCAGGTGTTGCTGTGGGAAGTGAGCCTGGGATAGAGACCAAATGTAAACTACAGGATGGCAGCATTGTGGGTTGTGTGGACAAGTGTCAGAATGGCTGTAGTCATCAGAAATTAAATCTTGGTAAAATGAAACATGTTGGAACAAAGCAGCGGTTCCGATACAGCGTGTATGGCGGCGTTTTAAAGAGGAAGTCCGATGTGTGCAGGCATGTTAAAAAGCACAGATTGCAGGATTCTGTTTCTACAGCTGTACAGGTTCTTCGTGATAATTCAGGTGTTGCATCTGATAATCTCTTAGTTGGCGCCAGTGTTAATGATGATAGACATGTTGAACGAGGTTTAGTTGAAGTGGAGGGGGACAATGAGGATTCTGTTCCTGATGCCAATAAAAAGAGTGGTGATGTCAAATGTGGGAAGACTAAAGGTTGCTCGTGTAATATATGTGGTAGAGTACTTACCAGAAAATGTGACTTACTGAGGCATTTGAAAACACATTCTAAGAAATTGGCCTCCTTTGTATCTTCAGGTGCAAAATATAAGAAGTTTGAAATAGCCGGCAACATAAAGGAAAGTATTTCAGGTATGAAGTCTAGGGAAGGAAGTCATTCTGAATTGGGGGAGACTAAAAATGTGTGTGGGTTTCCATGTCATGTTTGTGGTAGAATCCTTACAAGAAAGTTTGATTTGTGTAGGCATTTGAAAACACATTCCAGAAAGCCCAATATCTTTGATGGTTCATTTGATCTTGTATGTCCAGGTGTTGCTTCCAGCAGTGATATTTCATCAGGCAACTTTGGTCCAGGTAATGGGTTGGTTAGCACTCTACAGGAAGTAGGTGATGGCAGAGTTTGTGACGAACGTCTTAGAGAAAACAGATTTAAAAATGAAGGAAAGAGTGGTTTTTCATGTAACATTTGTGGCAAACTACTTACAAGAAAATTTGATTTATGCAGGCATTTGACAACTCATGCCAAGAAGCAATATCCTTGTCATAATAAGGGATTGTCAGATGCAAGATCTGCATTTGTAACTGATGTGCATTCAAGTTCGAGTGATGAAGTGCATTTGGAGGGTTCAAGGGTTAAGAAAAGTACTACATTTGATATCTGTACAGTCCAAAAGTTTTCATGCAATATATGTTCTAAATCTTATACAAGGAGATTTGATTTAAAGAGACACGCAAAGCAGCATTCGATTGAAGATATCGGTAAGATTATTGACTTGAAAAACAGTATTGACTATGAGTCACTGTCTGGTGCAAAGGTCATCATAGAAGGCAGGACGCTGTATAAGTGTGAACACTGTGCTAAGTACCTTATGACGAGGTCTCCTGTAAGTTCTGCCAAATCACGGTCTGATGTGGATAATGCTGTTGAAGAAGCTGTTGAAATTGATGTTGCTAAAGCCGTTAATAATGCCAGAGATGACTGTGATGAACATAAATCTGAAAAATTGGGTTTTCTTGAAGGTCATGAATCAGGTGATACTGATACTGCAAAGAATCAAAATTCCCGGGAAAGTGTCTTCCTTGCAACATTACGGCTCTCACTTGACAAAGAGATTCCTTGCTTGTTTGGAACCTGA
Protein Sequence
MAEHCATVATQEGSNLYWVEIRALVLRWKKTVDKDGDYIEKSHGFGKTDFKQAAPSTLQAFGNSDILHSLQVDSPVKSERANEQLYSIWIKTDDDDEEYYLCDVKELENDVQVTKAASVDAPDYVLGEESASQHHIEWNTNARFHQHIPHSADKYFELQSMFGKSEDNEDVGIPDRHVCSYCQKCVGNKSDLLSHLSDAHSDGVFHCKVCDERFCTIREVFLSHLAVHGIELSEEDVENYKDLFGYSFVQLEAECELNFDSKELDKHSDACRCVHCGLTLQTGEFMKGHDKVHRTKKLMMTVLRRFAETKSRDNVHAGEHPFECKYCGIGCQLSPHTSFKAFQEAKSALKHMYGQKDTMSTISDVSSHQLVWVKCEENTRNLQNCHYCNTSFATKNELEIHMSKSHPDTYHVKCDAVVGVQDEPIANSDACLDTVGNESEWLHNAAVSVAGSGRVPKKEVKVTRHCRKIFQHSVKKNFLCKVCERTFTRQYDLKRHAECHPPPRTDKVEEREFVNESDTSDVLVQSEWDEETKMEYEMMLGEEFVKKGKRKRSRCQQPLPTTFKAFQQKSVHSESCTLKYSKLEESRAVLNDQSTGNEAHSSYTASGRRKGRPFKGLEVRNRLTSGRSRRTANCNPRSAVRQKPNVEDTGESKEDLDSESMWYGIPNDDSDGEQKPDVDDLDRWQQFSVYQQSQYTSEKYMTVSQWSRWYQSAGGITNYYNGDTVYDDYDDDDDDGGGVGVLYYEQDEGNEFSPRRHPEGVSEDRPFYECHHCGKKLASRENMKVHLRIHTGERPFTCHICGKQFQAPSGIKRHLREVHEGVKEHVCDICGRAFANKRTCLQSSLSSFRAHQEANNAFGSVCRQKGCAPHLRSAHVFAYEYKKAVIKMKAHSSETGSGPVTAGSDTFSTLSVNGEHVNVSDTRHQPCSVTNERHLMLRSDGGDLEDTGRTALKKAAVMKNEAIVKKDAKVKRSSSGFQCGQCGRKIATKDKFKLHLRIHTGERPYTCHVCGKQFRVPAGCQLSPLASFRNYHEAYQSALLDIIHQKNTKDFETSVYLNKFECFTETDASCNCCGSIFTTRSELATHLSLRHSDSLFHCEICDGIFCESKAWFIKHMESHEDQLTAVATSVMCAERSKSNAREKCGTFPCRLLGRMFVRKPEMTRHMKSNPQMTNISETIRNGNDQNLNSKLESCMQEVKDKYPCSVCGEVFTTNFGVKRHCKSVHSLKSLRNWCASSKGNEELQQVSESYSKPSSNCDGHYDFSCTCGRALAGKSDTVRNQKHIHLAKKSSDGVHTEDIKSDLIVSKEEITCRICERVFTRKADVKRHVKNVHHKQQDGKPSESCGVDLHTTDIYPSLNDSGNSSLIEVRDVSLDTETVSRSRMYRTDAISRAKIKVNGKTYFHCQVCGKNLFRRCTCHLSTLTTFREFQQAQSALKSMYDPMVTISTVSQSVDWVKSEDYNLDELQATKTAEQHDSVELYHCDICDEKIKGNKHALETHIKGHKEYKRTEKRIVRDSDSSELGFELTHCESPDSHGRSSGGKKKKKKKKTKTRLKKLKVAKGKQTVLSLEDEDSVIGKTSGTTNPVTQCHISEDLNSQHHCCEHLKSRVLLFVCTRKCQQPPPQTPFKAFHHAQNEIRSMAQPRDTTDGLRGTNGLVKNECNDSEDTLLTCDYCGQTSTEKDELICHISSVHSLDLGSPGVAVGSEPGIETKCKLQDGSIVGCVDKCQNGCSHQKLNLGKMKHVGTKQRFRYSVYGGVLKRKSDVCRHVKKHRLQDSVSTAVQVLRDNSGVASDNLLVGASVNDDRHVERGLVEVEGDNEDSVPDANKKSGDVKCGKTKGCSCNICGRVLTRKCDLLRHLKTHSKKLASFVSSGAKYKKFEIAGNIKESISGMKSREGSHSELGETKNVCGFPCHVCGRILTRKFDLCRHLKTHSRKPNIFDGSFDLVCPGVASSSDISSGNFGPGNGLVSTLQEVGDGRVCDERLRENRFKNEGKSGFSCNICGKLLTRKFDLCRHLTTHAKKQYPCHNKGLSDARSAFVTDVHSSSSDEVHLEGSRVKKSTTFDICTVQKFSCNICSKSYTRRFDLKRHAKQHSIEDIGKIIDLKNSIDYESLSGAKVIIEGRTLYKCEHCAKYLMTRSPVSSAKSRSDVDNAVEEAVEIDVAKAVNNARDDCDEHKSEKLGFLEGHESGDTDTAKNQNSRESVFLATLRLSLDKEIPCLFGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-