Rluc021066.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- Zfy2
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010010852.1:5935-20277[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.019 1.9 9.8 0.6 1 23 477 499 477 499 0.96 2 16 8e-05 0.008 17.3 0.5 2 23 559 581 558 581 0.95 3 16 0.083 8.3 7.8 0.9 2 20 586 604 586 606 0.92 4 16 0.00038 0.038 15.2 1.9 1 23 612 634 612 634 0.98 5 16 0.00052 0.052 14.7 3.9 1 23 642 665 642 665 0.95 6 16 1.2 1.2e+02 4.1 0.1 2 23 676 697 675 697 0.92 7 16 0.72 72 4.8 5.2 1 23 718 740 718 740 0.93 8 16 6.9 6.9e+02 1.7 4.7 1 17 746 762 746 768 0.85 9 16 7.2e-06 0.00072 20.6 0.4 1 23 787 810 787 810 0.97 10 16 3e-06 0.0003 21.8 2.6 3 23 836 857 834 857 0.94 11 16 0.0049 0.49 11.7 0.3 1 23 863 885 863 885 0.97 12 16 8.8e-05 0.0088 17.2 0.2 1 23 891 913 891 913 0.98 13 16 2.5e-07 2.5e-05 25.1 1.1 1 23 919 942 919 942 0.98 14 16 0.096 9.6 7.6 1.5 1 23 948 970 948 970 0.88 15 16 9.3e-07 9.2e-05 23.4 0.9 1 23 976 998 976 998 0.99 16 16 2.2e-06 0.00022 22.2 2.6 1 23 1004 1027 1004 1027 0.96
Sequence Information
- Coding Sequence
- ATGTCCAATACGAAGATACAAGAAGAAGGAAGGAAAAGAGAGAGAAAAGAAGAAGAAGACACTGATCCCTCTATCTGTGGAGCACCCCCTCCAAAAACCAACCCCTGGCGTCCCCATCGCAGAGGGGGGGACTCTGTTGTACAGAGACACCTGCACAAATATGCTCAACAGGGGGCCAGTCCTGGCGAACCACTCCAGGGAGCTGGGTCTTCCAGCAAACCTAGGGACACTGAGCATTTGATTACACCTGAGGCCGGACCATCTGGCCTGACAGAGCAGGGAACCTCTATAGGCAAACCAGCTGAGGAGGACATTGAAGTCCAACAGCTTCCTACAGCGAGAACCAAACTTTCTGGGGCTGCTAGGAGGAAACTCAGGAAGGCTAAGGAGGGGCAGAGTGGAACCGGCTACAAAATCTTCACGGGATTGTCTGAGGGCACTTTTAAAGTACTCAGTGATCCCAAAGAGGAAATAAGGGGTCGGGCATCTAAGGGGAGACCCCGGACTCTGGACATCGGGACAGAGGGGAAGGTGGCTGGAGACAGCAGCTCCACTGAGCACCGGGAAAAGCAGCCAGGGCGACCCCATGGAGGCCAAGGTGCTGATAATGAAATAATTGTAAAGGTGGATACTGCAAGGATGGAGGCCTTGGACAACAGTTGTGTAAGGGAAGAACTGGAATGTAAAGGACAGTTGTGTCGTTTATGTGCAAGGAGCATCAGCAAGGGCATATATATATTCAGTGGAGCTGGAAGAGAACAACATCTTGCTGACAAAATCAATACATGCCTACCAGTAACTGTTAAAGTAACTGATTTCTTACCAAAGCAACTCTGCGTGTCATGCAGTAACAAACTAAACATTTGTTTCGATTTTGCTGAAACATGTGTTATGGCTGAGAAGAAGTTAAAAAGGATAATGAAGATTTGTCCATGGGAATCATCACTGACCACTTCTCACAGTTATTTTAATTATGCTAACAGAACCATAAGTGAAAAACATATTACAGATAGGCAGCAAGATAAATTAAATGATGTTACGGGTGATGACAAAGTATATTGTTGTCCACTATGTTGTGAAGGGAACATGATTCTTCAGAAAGGAATTTGTAATTCAGAAGAAATAGATGTAACAGATAGTTCTCAGTTCAGTACAAATGGTGAAATTGTGGAAATATTTGATTTAGGGGAAGAACTTGGTGATAAACAAATTCAAAACCTTGAATCTGTAAGTGACTTTCCAATCATCAACACCAGTCACAATCGAGACAATGCTAGCAGAGGTGTGAAACATTCCAGTCATGAAGAAAATATGGAAGATATTGATTTGGTTTCTTCTGTGACATTTTCATGTCGTTTCTGTGGTGATTTTTGTCCAGACCTGGATTCCAGCATAGCTCACTCTAAGTACCATGTGAATGAAAATGGTTTCCCATGTGTCATTTGTGATGCATGCTTTACAAAGGAAGTAGATATAGAAAATCACTTTAAAAATCATAATACTGACATGCTCAAAGGACTTGGTAAACTACAAAGTGAATGCATTGAGCAGGAAAATAAAGCACCCGTACCAGATGACACAAAACTTTGCAAGTGTGTAGAATGTGGCATGATATTTGGTACCATAGAAAGACTTTCATTTCATACCCAGTTTCATTGTGGAGCAAGACCCTTAGTTTGTGAACAATGTACAAAAGAATTTACCAGTGAGAATATGCTATTTCGTCATATGAATTTAGTTCATGGTGGTACAGAAACTTGTGTGAAATGTGGTACATCTTTCATGTCTAAAGTTAAGCTGGACACTCATGTCTGCGAACTTGTCAAATGGCCATTCAAGTGCAAGATCTGTAGGAAGCAATTTCAAGACACTGCTATGCTGAGAAAGCATACTGCATCTCATAACTTCATTTTAGCAAAACCCTTCCAATGTAATCAATGTGACACCAGTTTTACTCATATTTCTAAGCTGAATATGCATGTAGAGATTTGTCACTCCAGTCCCCTTGTTCCTCAGATATGTGTTAAATGCAATGTATGTAGAGCAGTGTTCCCCAGTATGGAGTATGCTTTACTACATGTAGAAAAACACAACGCATCCAGTTGGTCAGATAATGGTAAAAGTGTTGAAGAAATTGAAGCAACAGTGTTGTTCTGTTGCGAGTACTGTGAAATACTATTTACACACATGGAGCATTTGTTACAACATAGTTCAGAACATTCTGGTTTCAACTCATACCAGTGCACATACTGTGATATGCTCTTCCCAGACCATAACCAAATGAAATTTCATAAAAAGTGTCACTTAGAACATGAAAATCAGTGTGATGAACTGAGCCTGTTTTCAATCCCTTTGTTGTTTGTATGTGAAAAGTGTGAGAAGAGTTTTAATACATGGAGAGGATTGCAAATACACTATAATATTTTACACAGTGGTTTTCTGAGAGGAAATTTACAAAATGCTGAACAAAACAAATGCAGGGATGAAGAACATGAATTTCATCTGTGTGAAGATTGTGGTCAGAGTTTCAAGAAGCGATCTGACTTGAGACGACACCAACTGAAGGAACACCGTCCACAAAATAGGTTTCCATGTGAGGAGTGTGGTAAGGTGCTGTTGCACTACTCTGGGCTTATAATCCATAGGCGCCAgcacacaggtgagaagcctttcatgtgcgacatttgtggaaagagttttccacaaggtcctgccatgtatacacaccgacgaacacatacacgggactacccatacagatgtgaaatatgtggacagacattcaacaataaaggtgatctcaataatcaccgtcgctcaaaacacaccaaggagcgcccttTCGTATGCAATGTTTGCAACAAATCCTTCTTAACTAGTAATGTGTATTATCAGCACAAACAACTCCATGCTGGTATTCGCAAGTATAAGTGTACAGTGTGTGATAGGTCCTTTAGCCGTTGGAATGCACTGAGTATTCACACCAAGTCTcatactggggagaagcctcatgcttgtcatgtttgtggcagaggatttgcacagaaaggtgatatgaaaaagcacatgagaacccaGCATGGAGTAGTGAAGTGA
- Protein Sequence
- MSNTKIQEEGRKRERKEEEDTDPSICGAPPPKTNPWRPHRRGGDSVVQRHLHKYAQQGASPGEPLQGAGSSSKPRDTEHLITPEAGPSGLTEQGTSIGKPAEEDIEVQQLPTARTKLSGAARRKLRKAKEGQSGTGYKIFTGLSEGTFKVLSDPKEEIRGRASKGRPRTLDIGTEGKVAGDSSSTEHREKQPGRPHGGQGADNEIIVKVDTARMEALDNSCVREELECKGQLCRLCARSISKGIYIFSGAGREQHLADKINTCLPVTVKVTDFLPKQLCVSCSNKLNICFDFAETCVMAEKKLKRIMKICPWESSLTTSHSYFNYANRTISEKHITDRQQDKLNDVTGDDKVYCCPLCCEGNMILQKGICNSEEIDVTDSSQFSTNGEIVEIFDLGEELGDKQIQNLESVSDFPIINTSHNRDNASRGVKHSSHEENMEDIDLVSSVTFSCRFCGDFCPDLDSSIAHSKYHVNENGFPCVICDACFTKEVDIENHFKNHNTDMLKGLGKLQSECIEQENKAPVPDDTKLCKCVECGMIFGTIERLSFHTQFHCGARPLVCEQCTKEFTSENMLFRHMNLVHGGTETCVKCGTSFMSKVKLDTHVCELVKWPFKCKICRKQFQDTAMLRKHTASHNFILAKPFQCNQCDTSFTHISKLNMHVEICHSSPLVPQICVKCNVCRAVFPSMEYALLHVEKHNASSWSDNGKSVEEIEATVLFCCEYCEILFTHMEHLLQHSSEHSGFNSYQCTYCDMLFPDHNQMKFHKKCHLEHENQCDELSLFSIPLLFVCEKCEKSFNTWRGLQIHYNILHSGFLRGNLQNAEQNKCRDEEHEFHLCEDCGQSFKKRSDLRRHQLKEHRPQNRFPCEECGKVLLHYSGLIIHRRQHTGEKPFMCDICGKSFPQGPAMYTHRRTHTRDYPYRCEICGQTFNNKGDLNNHRRSKHTKERPFVCNVCNKSFLTSNVYYQHKQLHAGIRKYKCTVCDRSFSRWNALSIHTKSHTGEKPHACHVCGRGFAQKGDMKKHMRTQHGVVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -