Rluc012841.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- ZNF341
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010002926.1:11529-21519[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.049 4.9 8.5 6.4 1 23 58 80 58 80 0.97 2 13 2.1e-05 0.0021 19.1 2.5 2 23 309 330 308 330 0.97 3 13 8.7e-08 8.6e-06 26.6 0.5 1 23 336 358 336 358 0.99 4 13 3.2e-05 0.0032 18.5 2.3 1 23 403 425 403 425 0.98 5 13 0.17 17 6.8 1.4 5 23 437 455 431 455 0.87 6 13 0.042 4.2 8.7 3.0 1 23 461 483 461 483 0.96 7 13 0.0025 0.25 12.6 1.3 1 22 497 518 497 521 0.91 8 13 0.0081 0.81 11.0 2.4 1 23 523 545 523 545 0.91 9 13 9.9e-07 9.9e-05 23.3 1.5 1 23 551 573 551 573 0.99 10 13 4.2e-05 0.0041 18.2 0.6 1 23 579 601 579 601 0.98 11 13 2.6e-05 0.0026 18.8 0.7 1 23 607 634 607 634 0.97 12 13 0.0012 0.12 13.5 5.0 2 23 642 663 641 664 0.93 13 13 0.0013 0.13 13.5 4.8 1 21 669 689 669 690 0.94
Sequence Information
- Coding Sequence
- ATGTCTCATCTGTTGTTTGATTCGTTGGCTGGTATGACAGTGGACAACCAAACGGCTGTAACTGTTCAGTCTCTTTTAGACACTCAGAGTTTGTCCAGTGAATGTTTACCTGGAGCTACAGTTGTTGTTTCTCGCCCACCAAACACAATAACTTTGGATGAAGAAGATGTATTCCAATGTGGCAAGTGCAAGAAGCAGTTCACTTCATTCTGTCTGTTCATGAACCATAAGAAGGCACATGCTGTCTCAAGTGAACAGCTGGCAGGTTCTCCAGTGAAGGAGCAAGGCAGTTTAGTGCTCTCACTGGATCGAGGCCAGCCTGAAGGAGATGAACGAGGTGGAAATGCCTATGCACCCACACTGCAGGAATGTGAGACGGAGGTTGGGCAACCCATCATTCTGAGTGACTCGGACATTCTGAATTTCAGCATTGACCATGGTGCCCTCAATCTCAGCACTGGATCACATGTTCTTCCTTCCCTGTCACATGTAATACAGACTGGAACATTTCTAACTTCTCCTGTTGAACCGAGCAGTTCACTCAAGTCTCTGTCAGGGGTAGGGACAGGCAGTAACCTTAGTGTGACAACGCTTGAAGGCCAGCCCATCATTCTCACCGAGGGGTCGTTTGTAGCTGCGGGTGACATCCAGCAACAACAGCAGCAGCAGGCAGAGACAGATCTGAGCAATGGCAACAGCAAGATTGTTGAGTATTGCAGCAACGCAGAAGCCAAACTGGAGTTCCTGGATGCCACCACTGGCACTGTGGAATTCACGACACAGGATATCGTAACACAGCAGACGCAGTCCACAACTGGGGATGCAGAACTTTTGCTCAGCAGTATCGTGGAGCCACAGACACCGCAGCCAGTGAAGGTGGAGGATAGTAATGACGTTCAGCATGCAACAAGAACTCTAAAGCTGAAGTGTAAGTACTGCAGCAAACAGTTTGCCAAGAACTTTGACCTGCAGCAACACTTGCGAAGCCACACAGGTGAGAAACCCTTTCAGTGTGTTGTGTGTGGGCGCGCCTTTTCGCAAAAATCTAACGTGAAGAAGCACATGGCCACACACAAAGTCTGGCCGCATGGGCTGAACCAAACACTTCCCAAAGAACCAATCCAACCTGTTGCCAGGAGAGATGCTGAGGCAGCAACATCAGATAAGGACTCAGATCCTGAAGTGGAGCTGATGGTTGACAGATCTTACGTTTGCCAGTACTGTTCTACAAGGTTTGAGTCATACTATGAACTCAAGACGCACATGAAACTGCATTCACATCAGAAGGTATATAAGTGTATCCAGAAAAACTGCCAACAGACATTTTCTGATCTGGACACATTTGTGACACACACACAATTCCACTGTAATGAAGTGTTGTATCGGTGCCATGTCTGCAGTAAGCAGTTCCACACGTTGGCGGATGTCGGTATCCATCAGTACAGCCACAACGCAAAGACTGCACCACCGAAAGTTGGCAGCAGGTCTTATCGTTGTGTGAAGTGCAAAAGCAAGTTCTCGTCTCCTGAGTCTCTGGACCATCACATGGCAATCAGCACCCACAGTTACCCATGTGTGCACTGTGGGAAGGTATTTGCATGTGAGCGCTACCTGCGAAGACATCTTCCTACACACGGGACAGCCCAGTCTTTCACCTGCCAGCAGTGTGGCAAGGGCTTCCGAACTGAACAATATCTAAACACACACATGCTCACACACAGCTCACACAAACCTTATGTATGTCAGCATTGTCCAGGGGCATTCAATCGCAAGGACAAGCTTGTGAGGCATTTGCTGATCCATCAGACTGTAAAGAAATTCAAATGTCCATTCCGCTCATATTTGGGTTGTCCCAAGGAGTTTAATAGACAAGATAAACTAAAACTGCACATCCTGACCCATAGTTCGGTGCGTCCATCCTTGCAGTGCAGGATGTGCAACAAGACATTCCAGCGTCAGACACAGCTGCGCCAGCATGATAGAACACATCACCAAGTAGCTCTCCATACATGCCAACACTGTGGCATGGGTTTTAAGAAGAAGACGTTATTAACAGCACATCAGTGCAAATCTTCACAGGAACAGGTCGATGGGAATGGTGTTATACAGGTAAATAACCTGCAACAGACTGAAGCCCGGCCTCGGCTACAGCAGGTGGCAAGGAGAGGTATCCGAAAGTCCAGATTGAGGGGACGGAGTAAACGAGATGTACAATTGGAAGAGAGCATCAAGACTGGGGACAATGTTCCAACGATTGAGATCATTGTAATGCCAGTTCCAGTGTCCTTAGACCAACATGTTGCTGGTGATGGTAATACTGGTGGTGTCGGTGCGAGTGAGAGGGGTGGCATGTATCATGTGGTGTTTCCTGCCGAGTCTAAGATGCAGTCGGTGTTCCATACACAAGATGAGGCGGCCCTGAATCAGTGCAACCAGCAGCAAGACCAGGAAGTTCCTGTCACTTCCACAACAATTTGA
- Protein Sequence
- MSHLLFDSLAGMTVDNQTAVTVQSLLDTQSLSSECLPGATVVVSRPPNTITLDEEDVFQCGKCKKQFTSFCLFMNHKKAHAVSSEQLAGSPVKEQGSLVLSLDRGQPEGDERGGNAYAPTLQECETEVGQPIILSDSDILNFSIDHGALNLSTGSHVLPSLSHVIQTGTFLTSPVEPSSSLKSLSGVGTGSNLSVTTLEGQPIILTEGSFVAAGDIQQQQQQQAETDLSNGNSKIVEYCSNAEAKLEFLDATTGTVEFTTQDIVTQQTQSTTGDAELLLSSIVEPQTPQPVKVEDSNDVQHATRTLKLKCKYCSKQFAKNFDLQQHLRSHTGEKPFQCVVCGRAFSQKSNVKKHMATHKVWPHGLNQTLPKEPIQPVARRDAEAATSDKDSDPEVELMVDRSYVCQYCSTRFESYYELKTHMKLHSHQKVYKCIQKNCQQTFSDLDTFVTHTQFHCNEVLYRCHVCSKQFHTLADVGIHQYSHNAKTAPPKVGSRSYRCVKCKSKFSSPESLDHHMAISTHSYPCVHCGKVFACERYLRRHLPTHGTAQSFTCQQCGKGFRTEQYLNTHMLTHSSHKPYVCQHCPGAFNRKDKLVRHLLIHQTVKKFKCPFRSYLGCPKEFNRQDKLKLHILTHSSVRPSLQCRMCNKTFQRQTQLRQHDRTHHQVALHTCQHCGMGFKKKTLLTAHQCKSSQEQVDGNGVIQVNNLQQTEARPRLQQVARRGIRKSRLRGRSKRDVQLEESIKTGDNVPTIEIIVMPVPVSLDQHVAGDGNTGGVGASERGGMYHVVFPAESKMQSVFHTQDEAALNQCNQQQDQEVPVTSTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370438;
- 90% Identity
- iTF_00370438;
- 80% Identity
- -