Rluc030478.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- znf711
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010005250.1:30665-32254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.2 9.1e+02 1.4 0.9 2 16 12 25 12 27 0.79 2 13 0.0021 0.21 12.8 3.5 1 23 159 182 159 182 0.98 3 13 4.4e-05 0.0044 18.1 1.5 1 23 188 210 188 210 0.98 4 13 0.013 1.3 10.3 8.1 3 23 224 245 222 245 0.92 5 13 0.00042 0.042 15.0 2.9 1 23 257 279 257 279 0.96 6 13 0.00016 0.016 16.3 3.4 1 20 284 303 284 306 0.95 7 13 0.00052 0.052 14.7 0.8 1 23 312 335 312 335 0.93 8 13 1.1e-05 0.0011 20.0 0.2 1 23 351 373 351 373 0.98 9 13 0.014 1.4 10.2 3.0 1 23 379 402 379 402 0.95 10 13 1.7e-05 0.0017 19.4 0.3 1 23 414 436 414 436 0.98 11 13 2.2e-05 0.0022 19.0 0.4 1 23 442 464 442 464 0.93 12 13 3.8e-07 3.8e-05 24.6 1.1 1 23 470 492 470 492 0.99 13 13 4e-05 0.0039 18.2 0.7 1 23 498 521 498 521 0.96
Sequence Information
- Coding Sequence
- ATGAATGTTTGCTTTGGTTGGATATGTGCTGAGAAGTGTCAGAGTTGCAAACTGACCTACAGTAAGAAAAATCTGAAAGTACTGTGTTTTGCCAAAATTAATAAGCAAGCACAATTTTTTTCCAGGTGCAGCAGGTTATCAAAAAAACAAATCAAACTAGTCCACCATGCAAGGGAAGACACAAACTTGGCTACAGGAGGGCCCAGTAAAGGTGGCATTATTCAGACCAAAGATGTGCCCCATCTGGCTGGACAAGAGCCTCTAGATGACCTTTCTGCTCATGAAGTGTTTGGAGATGGAATTGTTTCACAAAATGAACAAAGCAAAAGTGATTGTCATGTGGTTGATAAAAATTCTGAATTTGGTTACGATTGTGACAAAAATATTATTTCCCGTGAGAGTTGTGTGAAAGACAATGAATCCATGAATAAGGAGCTAGAAAATTTTGAAATGCGAAACACAGGAGTACAACTTTATAACTGTCAGCACTGTGGGTGGGAATTTGGTTGTACATCTTCATTGAAACAGCACATAAAAACAGATCATAAAAAACTTTCTGAATACAGATGTAGGGTTTGTAATGAAGTGTTTACATCCAGAAATAGATTGCAGGCTCATCGAACCACTCACGATCCTAGTGTTTGGAATGATTTAGAGACATCACACCTTTGTCATACATGTGGGAAAACATTCAACACCTCAAGTAAACTGAGATGTCATGAAAAGAGAGTACATCAGCATATTCCTGTTGTCCTGAGTGAGAAGAAGCACATCTGTGAAGTGTGTGGATTGTCTTTTCAGTTTAACAAATACCTCAGGAAACACACATTAAAGCATGGAGAAAAGAACTTTGTATGTGAAACATGTGGCAAAAGATTTGAAACTAATTATAAATTAAAAATGCATCAAGAATGTCATTCAGAGCAGCGACCTTATATTTGTAAGATCTGTGGGTCAGCTTATAAGAGACACAGGAATCTTCTATCTCACGAGCAGGAAGTGCATGGCATATTTTCGTTAGGACCTGGCAGAGTGAAAGAATCTTTGAGTTTTCCGTGTGGTGTATGTAAGAAAGAATTCACTACACCAAAGAGAGTGGCAGCACACATGCGTACACACACAGGCGAACGTCCATTCAGTTGTGAACATTGTGGCCACGCATTCAGGATATACAGCTCTTTGTTATTTCATCGGAGGGTAGTTCATGAAGGTCGCAAGGTCTATGGCAATAAAGGAGTCTTCCCATGTGAAGTGTGTGGCAAAGTCTTCTCAACTAAACAGTATAGGGATATCCACCTCCGAATACACAAAGGGGAGAAACCATATGTCTGTAAGATTTGTAATCGAGCATTCACCCAAAGGACCAGTCTTGTGAACCATTCTGCACTTCATTCAGACCATCGACCCTATCCGTGTCACCTCTGTGAGAAAGCATTCCGTCGGCGGGAAACACTTGTCATTCATATCCGCACACACACAGGAGAAAAACCGCATGTTTGTGAAATTTGTGGCCGTGGATTTGCTCAGCTGACGGATATGAAGAAACATAGGTTGAAGATTCATAATGTTGTTATACCGAAAAAGAATTGA
- Protein Sequence
- MNVCFGWICAEKCQSCKLTYSKKNLKVLCFAKINKQAQFFSRCSRLSKKQIKLVHHAREDTNLATGGPSKGGIIQTKDVPHLAGQEPLDDLSAHEVFGDGIVSQNEQSKSDCHVVDKNSEFGYDCDKNIISRESCVKDNESMNKELENFEMRNTGVQLYNCQHCGWEFGCTSSLKQHIKTDHKKLSEYRCRVCNEVFTSRNRLQAHRTTHDPSVWNDLETSHLCHTCGKTFNTSSKLRCHEKRVHQHIPVVLSEKKHICEVCGLSFQFNKYLRKHTLKHGEKNFVCETCGKRFETNYKLKMHQECHSEQRPYICKICGSAYKRHRNLLSHEQEVHGIFSLGPGRVKESLSFPCGVCKKEFTTPKRVAAHMRTHTGERPFSCEHCGHAFRIYSSLLFHRRVVHEGRKVYGNKGVFPCEVCGKVFSTKQYRDIHLRIHKGEKPYVCKICNRAFTQRTSLVNHSALHSDHRPYPCHLCEKAFRRRETLVIHIRTHTGEKPHVCEICGRGFAQLTDMKKHRLKIHNVVIPKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -