Basic Information

Insect: Reticulitermes lucifugus
Gene Symbol: -
Assembly: GCA_026260175.1
Location: JAKCWW010001394.1:41283-47484[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.6e-05 0.0026 18.8 1.0 1 23 409 431 409 431 0.99

2 10 0.00071 0.071 14.3 1.9 1 23 438 460 438 460 0.98

3 10 4.3e-06 0.00043 21.3 0.7 2 23 517 539 516 539 0.95

4 10 0.0083 0.83 10.9 0.0 3 23 641 662 640 662 0.97

5 10 1.6e-05 0.0016 19.4 1.3 2 23 696 717 695 717 0.97

6 10 1.8e-06 0.00018 22.5 0.5 1 23 723 745 723 745 0.98

7 10 0.00055 0.055 14.6 3.8 1 19 751 769 751 774 0.91

8 10 1.1e-07 1.1e-05 26.3 0.7 1 23 780 802 780 802 0.99

9 10 5.3e-07 5.3e-05 24.1 1.9 1 23 808 830 808 830 0.99

10 10 1.6e-06 0.00016 22.6 0.9 1 23 836 858 836 858 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.6e-05	0.0026	18.8	1.0	1	23	409	431	409	431	0.99
2	10	0.00071	0.071	14.3	1.9	1	23	438	460	438	460	0.98
3	10	4.3e-06	0.00043	21.3	0.7	2	23	517	539	516	539	0.95
4	10	0.0083	0.83	10.9	0.0	3	23	641	662	640	662	0.97
5	10	1.6e-05	0.0016	19.4	1.3	2	23	696	717	695	717	0.97
6	10	1.8e-06	0.00018	22.5	0.5	1	23	723	745	723	745	0.98
7	10	0.00055	0.055	14.6	3.8	1	19	751	769	751	774	0.91
8	10	1.1e-07	1.1e-05	26.3	0.7	1	23	780	802	780	802	0.99
9	10	5.3e-07	5.3e-05	24.1	1.9	1	23	808	830	808	830	0.99
10	10	1.6e-06	0.00016	22.6	0.9	1	23	836	858	836	858	0.97

Sequence Information

Coding Sequence: ATGGATGACTCTGGGCAATCACAAGAACTTCTTGAGAGTGCAGAGATGGTGACCCAAATGCAAACAGACGTAGTGAAACTAAATACATCTGATACAGGGAAAGGTGATGAGGAAGAAGAACCACCTCCTGAACTAATAAGTGCCCAATATATCAATATACATCGTGTGCCAGAAACAATGAGCAAGGGGCTGGTAGACTGTGGTTCACCAGCTCCTCAGGCTTTGATAAGTGGTGAATTGATGCAACACCATGTTGTGCATGGTGGCATTGTTGTTGACATGATGGTTCCTCCACCTCCGCCTCCTCCAGATTTCCCCCAGCATAGTTCCTTGGATCGTACCACACTTCCACAGTACATATCTGAACATTATGATGCGACAGATGATCTCCTGACTCATGATTTGACAGAGGAAGACCGTAGGTTGGCAGCAGCACTGGTTGCTGTTCAGCAACATCATCACTCAATAGTCACTTCAGAATCAAATGTGATTGTTAGTCCAGCAGGGTTGCCAGGACTTATGACCACCACTGGCCACCTAGGAACCAAAGTCCAGGTACCTGTATCTATAGATCATCACATTACAACCATGACACCCATGTCAACAGTGACAGGAGTGCCGGTGGACAAACCTGCAATGGCTGCCATGGTGTCTAGCTATATACAGGCTGTGGAGGAAGAAGCAGCTGCAGGAGCTAATAGCGCACAACAGCACCTCTTGGATCACCATCAAGGAGACAGAATCATGAAGATGTATCAACCACAACACCAACACCAAGAAATAAGGTTACCTCCTTTGCCACCTCTCAAGAAAGTGCTTTCAAGTCAGTCTGTGGCAATCAGAAGCCGTTATGTCCGCCCTCATATCCAGGACATATCACAAAGGCAGGAGGTGCTACAGCAAGAAACAAGTGAGCTGGGGAGTCGGTTGCAGCAGTCTCAACAGGAGCAACAGCAAAATATGTTAATAGAGGATGTGTCTGGGACTGTTGCAGAAGATGACAGTGGTCTGAAGGAAGAGTATGATGTGAAAAGTGAAGGTTTGGAAGATGATTTAGGTGATGAAAGTGATGAACCTCTTCAAGATGATAATGATTCTGACTATGATATAGAAAGTGACTTAAGGCCCTCTAGAAAAAGTCTCCCGCATAAGAAACGCATTCCACGTAAGTTAAAAAATCTCAAAAAGTCAACCTCACCTGCGAGAAGTATTCACACAAAGTGTTATAAATGTGTGAAGTGTGGGGAACAGTTTAGCAGCCAGTCCACATATGCTACACACCGTGCCACTCACAACACAAATAAGAAAACATTCAGTTGTGAGCTCTGTAGCAAATCTTTTGCCAACCAACTCAAGTTCTTTGAGCATTTGAAATCCCATTATGAACCCACGGTATCTACTGGAACTGCAGATCCAAGTCCAACGGAAAGCGCCAGTAACAATAAAGAAAAAAATGCAAATACAAAGGATGAATCTCAAGTGAAGCAAGAGAAGGATAGCAAACAGTCTGTAGCTGCTCCAACCGTGGGAGCAATTCCACCTCCTCTTAATTGTAGTCAGTGTGGTAAAACTTTCAGACGCCAGAAGGCCTTGGAAACTCATGTAAATATATCTCACCCAAAACAAGAGGATATTGAAGAGTTCAGTGAACCAGAGGATCTAATGGAAGGCATCAGAGGAGTTGTTGATGTTGGGGATGTGGATACTGGTGATGAAGCAGAAATGGGATGTATTCCATCACCACCTGTTGTCAGGGGGCTGAAGAACAATAATGAAAAGGAATGGTATCGCGAAGAAGATTTACATGCTGCAGAGGCTGAtctgcaagaaatagaagagcaacataatcaacagcagcaacatcagcatcaacatcattctcatttccatcatcaacCTATGGATGAACCTGACAACATCTGTGAGTTGTGTGGGGATGTGTATGAGACCAGTGCACAGTTGGAACAGCATGTTCAAACAGATCACTTGGAATTTACACCAGATCCAGGAGGTAGGGATGGGATGTTGTTGTCCCCAAAGAGACATTTGTCCGGGAAAAGATCTCGTAGAGGGGGACTTCATCTTGTAtgtcctcagtgtggtcgaatgttcaatcaccgtaattcccttgtttatcatcttcgaagtcattcaggtgaacgtccacatcaatgtgaagtgtgtgggaagagcttctttgcggcaagtgcactaaaagtacatatgcgtctacattctggtgataaaccttacaagtgtgagttttgtgggcgacatttccgtcagtggggtgatctcaagtaccattgtatctcaattcactcagaggagaaaaactatcagtgcgagtattgtggaaaggactttgctcgcaaatactctcttatagtgcaccgtcgcatccatactggagaaaagaactataagtgtgagttctgtGGCAAGAGCTTCCGTGCCTCATCCTATCTCCAGAACCACCGTAGGATACACACAGGTGAAAAACCTCACCCCTGTGAAGTGTGTGGAAAACCTTTCCGTGTCCGTTCTGACATGAAGCGCCATCTGAACACACACAACCGTGATAGGCACCGTGGAAATAATGGCAATTCAGTTACAAAATCCTCTGGGAGTGGGAGTGATATCCATCACAACCTGCTTCATGGACAACCAAAACTGGAGGAACATGACTCCGAATTGGATCCTGATCAGCTGGATGCTCACGGCAGTCTTCCACCCAACCACACAATTACTGTGGAGCACCAGAGCATCTCCGATCTGAATTCTGTCGCAGAAATCACCATTCAGCCAGAAGGTGGTGGCCCAGAGAGCATTTTACCAGATGAAACTTTGGTGGATTCAGGGGTTGTCCAGCAACCAATCAACCTCAATATCGCAGTGCCAGCTGTTGCGACAAGACAGACCCAGACCCATCAGTTGTCAGCAGCAGCACAGGCAGTCTCCGAAGAAGTACTGCATTATACTCGGGACCCATTAGAAGCTGTACGAGATGGAAGTAGTACTCTGTATGTGTGGCCAATCTATATGACATAG
Protein Sequence: MDDSGQSQELLESAEMVTQMQTDVVKLNTSDTGKGDEEEEPPPELISAQYINIHRVPETMSKGLVDCGSPAPQALISGELMQHHVVHGGIVVDMMVPPPPPPPDFPQHSSLDRTTLPQYISEHYDATDDLLTHDLTEEDRRLAAALVAVQQHHHSIVTSESNVIVSPAGLPGLMTTTGHLGTKVQVPVSIDHHITTMTPMSTVTGVPVDKPAMAAMVSSYIQAVEEEAAAGANSAQQHLLDHHQGDRIMKMYQPQHQHQEIRLPPLPPLKKVLSSQSVAIRSRYVRPHIQDISQRQEVLQQETSELGSRLQQSQQEQQQNMLIEDVSGTVAEDDSGLKEEYDVKSEGLEDDLGDESDEPLQDDNDSDYDIESDLRPSRKSLPHKKRIPRKLKNLKKSTSPARSIHTKCYKCVKCGEQFSSQSTYATHRATHNTNKKTFSCELCSKSFANQLKFFEHLKSHYEPTVSTGTADPSPTESASNNKEKNANTKDESQVKQEKDSKQSVAAPTVGAIPPPLNCSQCGKTFRRQKALETHVNISHPKQEDIEEFSEPEDLMEGIRGVVDVGDVDTGDEAEMGCIPSPPVVRGLKNNNEKEWYREEDLHAAEADLQEIEEQHNQQQQHQHQHHSHFHHQPMDEPDNICELCGDVYETSAQLEQHVQTDHLEFTPDPGGRDGMLLSPKRHLSGKRSRRGGLHLVCPQCGRMFNHRNSLVYHLRSHSGERPHQCEVCGKSFFAASALKVHMRLHSGDKPYKCEFCGRHFRQWGDLKYHCISIHSEEKNYQCEYCGKDFARKYSLIVHRRIHTGEKNYKCEFCGKSFRASSYLQNHRRIHTGEKPHPCEVCGKPFRVRSDMKRHLNTHNRDRHRGNNGNSVTKSSGSGSDIHHNLLHGQPKLEEHDSELDPDQLDAHGSLPPNHTITVEHQSISDLNSVAEITIQPEGGGPESILPDETLVDSGVVQQPINLNIAVPAVATRQTQTHQLSAAAQAVSEEVLHYTRDPLEAVRDGSSTLYVWPIYMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00396651;
90% Identity: iTF_00370397;
80% Identity: -