Rluc025176.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010023599.1:5386-6774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0023 0.23 12.7 4.6 1 23 73 95 73 95 0.98 2 13 0.00032 0.032 15.4 0.4 3 23 102 122 101 122 0.95 3 13 0.0001 0.01 16.9 0.4 1 23 128 151 128 151 0.97 4 13 0.00039 0.039 15.1 1.5 2 23 158 179 158 179 0.98 5 13 6.2e-05 0.0062 17.6 2.6 1 23 194 217 194 217 0.93 6 13 0.0023 0.23 12.7 1.2 1 23 224 246 224 246 0.96 7 13 0.00012 0.012 16.7 0.5 1 20 252 271 252 272 0.96 8 13 2.1e-05 0.0021 19.1 2.6 1 23 280 303 280 303 0.94 9 13 0.00091 0.091 14.0 1.9 1 21 319 339 319 341 0.95 10 13 6.2e-05 0.0061 17.6 0.6 1 23 348 370 348 370 0.98 11 13 0.00017 0.017 16.3 0.1 1 23 376 398 376 398 0.98 12 13 5.5e-07 5.4e-05 24.1 2.3 1 23 404 426 404 426 0.98 13 13 3.3e-06 0.00033 21.6 0.3 1 23 432 455 432 455 0.96
Sequence Information
- Coding Sequence
- ATGAGAAACACAGGTCTGTTCCTGCCCAAGCCACCCCCATCTCCAGCAATGCCATCTGGTACTTCAGTGACAGACTTCGACAAATCTGCAGGGTCACAACAGGAATCCAGTGTTGTTGTGAAGGAACTGAAAAACACTTACAAAAAATCTGTGGAAAACACAAATATCTTGGTGAAGTCTGACACATCCATGTCTGGGAAAATTGAACGTGTGAGGCATACCTGTAGCATATGTGGGAGGAAGTACTTGACTAAGAAATCATTGAGAGAGCATACAAAGAAACACTTCCAAAAGAGAGCAAATTGTGACATTTGTGGGAAGACATACAGGAATGAAAATGTACTGAAAACACACGTAAGCCTTCATACAGGCCCTCAACCATACACATGTCAACCTTGTGGAAAGGGGTTTATCTTTTTGTCGTCTCTGAAACAGCACTTGAAAATAGATCATAAGGAAAAATTTGAACGTAAGTGTGATGATTGTGGAAAGATGTTGACTTCCGAGCAGCGCTTCAAGAACCATCAACTTACCCATATTAAATCCAAAATTGATGGAAAGGAAGTTCCTTCAACATCCCACATTTGTCAGAAGTGTGGGAAGGCTTTCAAAAGGACAGCTAGTTTAAGAGTTCATGAGCAGCACATCCATCAGGGTATTCCAAAACAACATATATGTGAAGTTTGTGGAATGATGTTTCATGTTGGTGCCAAATTGAGGCGCCATATGGTGAAGCATACAGGCGAGAGACCATTTGTATGTGAAACTTGTGGGATGCGTTTTGGTACGAAGCATCTGTTGAAAAATCATCAAGTTTGCCACTCAGATCTGCGCCCACACAAGTGCAAGGTGTGTGGTAAAGCATTCAAAAGACAAAGGAACATGAGAGGACATGAACAAAATATGCATGGTTTAGTCAATGCACGTTCAGAACAAGACAAGGATGGTATTAGTTACCCATGTTCTGTATGTGAGAAGGAGTTCTCCACAAAGCAGAAGGTGGCAATGCATATGAGGTGCCATACAGGACAGTTTATAGGATTCCCTTGTGACATATGTGGTAAGGTTCTGTCCTCGAAGCATGGTCGCGATAACCATATTAGAACTCATACTGGTGAACGCCCGTATGTCTGTAAGGTCTGTGGCTTAGCCCTGAAGACTCCAGCACAACTGCATGCTCATAGTGAGACACACACAGACAAGAAGCCTTTTCCATGTACCATCTGTAACAAACGGTTCCGACGTCGCCCACATCTCGAGGGACACCTGCGCACACATACAGGAGAGAAACCTTACATTTGTGACATTTGTGGCCGGGGATTTTCCCAAAATGGTGATATGAAGAAACATAGGATTAAACTTCATAATGCAGGTGATATGAAACAGTGA
- Protein Sequence
- MRNTGLFLPKPPPSPAMPSGTSVTDFDKSAGSQQESSVVVKELKNTYKKSVENTNILVKSDTSMSGKIERVRHTCSICGRKYLTKKSLREHTKKHFQKRANCDICGKTYRNENVLKTHVSLHTGPQPYTCQPCGKGFIFLSSLKQHLKIDHKEKFERKCDDCGKMLTSEQRFKNHQLTHIKSKIDGKEVPSTSHICQKCGKAFKRTASLRVHEQHIHQGIPKQHICEVCGMMFHVGAKLRRHMVKHTGERPFVCETCGMRFGTKHLLKNHQVCHSDLRPHKCKVCGKAFKRQRNMRGHEQNMHGLVNARSEQDKDGISYPCSVCEKEFSTKQKVAMHMRCHTGQFIGFPCDICGKVLSSKHGRDNHIRTHTGERPYVCKVCGLALKTPAQLHAHSETHTDKKPFPCTICNKRFRRRPHLEGHLRTHTGEKPYICDICGRGFSQNGDMKKHRIKLHNAGDMKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -