Rluc019395.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010018348.1:4045-9894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00084 0.084 14.1 7.5 2 23 115 136 114 136 0.95 2 20 0.0015 0.15 13.3 4.3 2 23 194 215 193 215 0.96 3 20 0.0023 0.23 12.7 1.1 2 23 226 247 225 247 0.94 4 20 0.53 53 5.3 0.3 1 23 253 276 253 276 0.90 5 20 0.014 1.4 10.2 1.0 2 23 281 302 280 302 0.96 6 20 0.00013 0.013 16.6 0.1 1 20 310 329 310 331 0.94 7 20 1.4e-05 0.0014 19.6 0.6 1 23 339 361 339 361 0.97 8 20 0.0013 0.13 13.4 1.7 1 23 367 389 367 389 0.95 9 20 0.00032 0.032 15.4 1.2 1 23 395 417 395 417 0.93 10 20 0.026 2.6 9.4 1.4 1 23 423 445 423 445 0.98 11 20 0.007 0.7 11.2 0.1 1 23 838 860 838 860 0.97 12 20 0.047 4.7 8.6 5.4 1 21 911 931 911 933 0.92 13 20 0.0036 0.36 12.1 4.4 2 23 942 963 941 963 0.94 14 20 0.0037 0.37 12.0 1.3 1 23 969 992 969 992 0.96 15 20 3.3e-06 0.00033 21.6 1.9 2 23 997 1019 996 1019 0.94 16 20 3.3e-05 0.0033 18.5 0.1 1 20 1027 1046 1027 1048 0.94 17 20 0.0022 0.22 12.8 0.2 1 23 1056 1078 1056 1078 0.95 18 20 0.0013 0.13 13.4 1.7 1 23 1084 1106 1084 1106 0.95 19 20 0.00051 0.051 14.7 1.0 1 23 1112 1134 1112 1134 0.93 20 20 0.031 3.1 9.1 1.2 1 23 1140 1162 1140 1162 0.98
Sequence Information
- Coding Sequence
- ATGACATCAGTCTGCAATACTGTCAGACAACAGAAGAAGGACTTTAAAGATGACAGTGTTGAGGATAAGGATAATGGTGGTGGTACAGAAAGTACAGATTTTAATCCCACCAGATTTCTGACTGTTACACATAATGAAACTGCCATATCTGAAAATATTTCACCTGTCATCAGAAATCCCCCTATCATGCATTATGCCATGTTGAAAAATGACCGTAAAAAGAGTAAAAATAGATGGCCGGGAAGATGTCAGCAATTGGCTACACCTACAACATCAGTGCAGCCGAAACATGGCAGAACAAACAAGAATAGACACCATTTGAATTCAGAACAAGCTCTCTGTTTTTGCACATTTTGTGATAAGTACTTTCCAAAGAAACATTTGCTGAAACGTCATATGAGGCTGCATACTGCCGACATTAATACAGAAATGAGTGAGGCATTAGACAAGATGTCAGAACTGAAAGAAGAAGTGCAGAAAGTTTCTTACATTTGTGAGACATGTGGTATGGATTGTCAGTGCGTATCAGCGTATATGCAACATCAAAAAATCCACAAGAAGAGAGAGAAAAAATTGTTGTCATGTCACATATGTAGAAAAGAATTCAAATTTAATTCTTTGTTGCTTCATCATGTGGAAAGGCATAAGCCCAAAAATAAAGTAGGGAAGTCATTATCATGTCTTACTTGTGGCAAGAAGTATAGTAAAACTGGTAGCTTAACAAAACACGAGCTTCAGCATGAAGGAAAGGGAAGTTTTCGCTGTCGCCCTTGTGGCGAAGTTTTTGGTACCGAAGCTGAACGGACAAAACACCGTGACGAGAAGCACGAAAAGCCTTGGAAGTGCACAGTATGCAATCATATGTTTGCCAGTGAACAGAAACTTGATTCACACGTGAAGTGGCACGAAAGCAAGGAgacagaagtgtttgtttgtaatgtttgtgataaagaattcaaactgaaagtaaatcttaaagttcacgtggaaagtcgatgcggtatggacccacagcacgtgtgtaaagtttgtgggaaagcctttatgacacgtgggacacttgttactcatatgttgcttcatacaggagaaaagacgtttctgtgtcggttctgcggtaagagttaccggctcaaagtggagatgcagagacatgagcggtctcacacaggagagaaaccgtttgtatgtaaagtgtgtaataaagcttttgctcatagagagagtcttgttacgcataacactctgcatactggcgtacgcccttacatgtgcgaagcgtgCGGCTCCACCTTCTCGTGTATTGGGAATCTCATAAAACACAGAAAAACTCATCGTAATGGATGTGCACTAGTCACCCCTGCCATGACGTCAAATAAACCTAGGGTAAAATCCACCACCAGTCAAGTACAAACTAATGAGAAGAACATTACAAGAACAAAACTGCCGACTGAACACATGCCATTGGCAAAGCAGGGATGTGGTAACAATGAAGAGGCTCCGGTTTTGTCTGGTAGTTATTGCGGTTACAAAAATTCAAATTGTGAAGAGAATCATGACTGGATTTCACCTGTCTTCAGCAGCAGTAATAAAGCAGTTGAGCAGCCACTGACAGATGATCGATTCTGTCCGATTGCAGATCTTCATCTTGCTAGTATGGAACAAAATATTAGAAGTACTCAGTGTTGCTGGGGAAGTGGCAACCTCATGGGACTGCCTCCTGATGCCGTGCAGTCATTTGGAATCTACAGTGCAGTTTCCAAGGAATTAAAGCCTGAGTCAACAAGAAATCTTCCACATCCTTTCTGTGCTGATGGTAAACCTACAGTTGGTAGCACTTTCCAAAATGTAGACAATCATAAACTCCCAAATTATGGTTCAGAAAAATATCCCCATGATTGTGGGCCTCAAAGTCCAGATATTGAGAAAAGTTGCTTTATTCAAAAAACAGTTGCTGACCTTTTTCAGCAGCACAGTACCTGTAAACCTGTAGACGATGTTGCTCAGAATATAGTTCCTGCTCTTAAGAAATCTGGTTGCAATTCAAGTTCTGACTGTGGAAATCCTTTATCATCTGTGGTGAATGGACCAGAGGATGACAGTACGTGTGATGATGATTTTGTGGCTAATCACTTCACTGTACAAAATTTGGTGAGTAACCTGAAATCCAGTGGTGTGGATGATAAACACAGTAATCCTGCTCTTAAAACTGATTCTAAGGAAACAGAAGAGTTGTCAAATGGTGGATCGGACAGTGGTTTGTCAGAACCAGAAGTGACTATGTCAGAAGTACAAATAAAGTGTAATTGTACTGTAAAAACGGACGGTGAATTAGGTGTGGAAAATGTACATGATGATGGAAAACTTGTATTTGAAACTGGGGTAACGTGTCCATCGAAGAAAATGCCTCGAGAACGTAAGCAAAAATATCCTGCAAGATGTGATGTTCAAAATGAAGAATCAGAAACAACTTCAGCTTCTAAAAGTGTAGGTGACTGTCCTGATAATCACTTTTCATGTGTTTTATGTGGTTTAGAATTTGTTCAAGAACAGTTGTTAAGTGAACATGTACAGTCACATTCAGATCGTGGTAACAGAGACGATGACGTAAACGGGGACGGTTGTAAAAAAACAGGTGTAGCTTCTGATGACGATGAGCCGCTAGATAAACGTTTGGAACATCATTTAAAGAAAGCAGAGGTTCTTAATTCAGAAGTGGGCCCAAGAAAGTATCTTTGTCAGTACTGTAATAAGTATTTTGATTTTGTGTCGCAATTGAATCGTCACAGGAAATGCCACTCATCAGAGGAAAAGGAAGCCACTCCGTGTCGTCACTGTGGTAAGAAGTACACTAACAGAGCCTGTTTGATAAAACATGAGTCTCAGCACACAGGTGTTGGTGTTTTTAAGTGCAAGCAGTGTGGTGATGGTTTCAACTCAAAACAAGAGTATCGAGCTCATCGAGCAAAGCAACATGGCAAACAGTGGAGCTGTTCAGAGTGTCAGCGCTCTTTCTCAAACTCAAGCAACCTAAAAAATCATTATAACAACAAACATCTTGGTCGTGAGGCACAGTcatatgcatgtaatgtctgtggcaagctgttcaaacagaaaggtaatctcaaagttcacgtagatagtcggtgtggatcagaaccaagacacatgtgcaacatttgtggcaaggcattTATGAGCGGTGGTTCTCTTGGTACTCACTTACTGCTCCACACAGGTGTAAAGACGTTCCTCTGTCGGTTCTGCGGTAAGAGTTACCGGCTCAAAGTGGAGATGCAGAGacatgagcggtctcacacaggagagaaaccttttgtgtgtcaagtgtgtaataaagcttttgctcatagagagagtcttgttacgcataaCACTCTCCATACTGGGGTACGCCCTTACATGTGCGAAGCTTGCGGCTCCACCTTCTCGTGTATCGGAAATCTCATAAAACACAGGCAGACTCATAACAGACGGTGtgatatagcaaggcagtga
- Protein Sequence
- MTSVCNTVRQQKKDFKDDSVEDKDNGGGTESTDFNPTRFLTVTHNETAISENISPVIRNPPIMHYAMLKNDRKKSKNRWPGRCQQLATPTTSVQPKHGRTNKNRHHLNSEQALCFCTFCDKYFPKKHLLKRHMRLHTADINTEMSEALDKMSELKEEVQKVSYICETCGMDCQCVSAYMQHQKIHKKREKKLLSCHICRKEFKFNSLLLHHVERHKPKNKVGKSLSCLTCGKKYSKTGSLTKHELQHEGKGSFRCRPCGEVFGTEAERTKHRDEKHEKPWKCTVCNHMFASEQKLDSHVKWHESKETEVFVCNVCDKEFKLKVNLKVHVESRCGMDPQHVCKVCGKAFMTRGTLVTHMLLHTGEKTFLCRFCGKSYRLKVEMQRHERSHTGEKPFVCKVCNKAFAHRESLVTHNTLHTGVRPYMCEACGSTFSCIGNLIKHRKTHRNGCALVTPAMTSNKPRVKSTTSQVQTNEKNITRTKLPTEHMPLAKQGCGNNEEAPVLSGSYCGYKNSNCEENHDWISPVFSSSNKAVEQPLTDDRFCPIADLHLASMEQNIRSTQCCWGSGNLMGLPPDAVQSFGIYSAVSKELKPESTRNLPHPFCADGKPTVGSTFQNVDNHKLPNYGSEKYPHDCGPQSPDIEKSCFIQKTVADLFQQHSTCKPVDDVAQNIVPALKKSGCNSSSDCGNPLSSVVNGPEDDSTCDDDFVANHFTVQNLVSNLKSSGVDDKHSNPALKTDSKETEELSNGGSDSGLSEPEVTMSEVQIKCNCTVKTDGELGVENVHDDGKLVFETGVTCPSKKMPRERKQKYPARCDVQNEESETTSASKSVGDCPDNHFSCVLCGLEFVQEQLLSEHVQSHSDRGNRDDDVNGDGCKKTGVASDDDEPLDKRLEHHLKKAEVLNSEVGPRKYLCQYCNKYFDFVSQLNRHRKCHSSEEKEATPCRHCGKKYTNRACLIKHESQHTGVGVFKCKQCGDGFNSKQEYRAHRAKQHGKQWSCSECQRSFSNSSNLKNHYNNKHLGREAQSYACNVCGKLFKQKGNLKVHVDSRCGSEPRHMCNICGKAFMSGGSLGTHLLLHTGVKTFLCRFCGKSYRLKVEMQRHERSHTGEKPFVCQVCNKAFAHRESLVTHNTLHTGVRPYMCEACGSTFSCIGNLIKHRQTHNRRCDIARQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -