Rluc019250.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010022593.1:5959-7728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 1.1 10.6 1.2 1 23 115 138 115 138 0.97 2 14 8.1e-05 0.008 17.3 0.2 3 23 162 183 161 183 0.96 3 14 0.0036 0.36 12.1 0.3 3 23 190 210 189 210 0.97 4 14 0.00021 0.021 16.0 4.8 1 23 216 239 216 239 0.98 5 14 0.00056 0.056 14.6 1.4 2 23 246 267 245 267 0.96 6 14 4.2e-05 0.0041 18.2 0.3 3 23 275 295 274 295 0.98 7 14 3.7e-06 0.00037 21.5 2.4 2 23 302 323 301 323 0.96 8 14 9.9e-05 0.0099 17.0 0.3 1 23 329 351 329 351 0.96 9 14 6.9e-05 0.0068 17.5 1.8 1 23 357 379 357 379 0.98 10 14 0.053 5.3 8.4 1.1 1 23 391 413 391 413 0.96 11 14 0.00024 0.024 15.8 0.1 1 23 420 442 420 442 0.97 12 14 1.5e-05 0.0015 19.5 0.9 1 23 448 470 448 470 0.95 13 14 1.2e-05 0.0012 19.9 1.2 1 23 476 498 476 498 0.98 14 14 3e-06 0.0003 21.8 1.1 1 23 504 526 504 526 0.98
Sequence Information
- Coding Sequence
- ATGTTACTTCTGTATTTCAGAGTGTATCCAAACCAGAGACATGATAAAGTGAACATAATTAAGAAACCTGCCCACTTTATTCACGTTAAAAGTTCAAACACTGCTGAAGCAGGAGATGCAACAATTGAACATGAATCAGCTGAATTGTTACCAGTAGCAACAAAAGAAGTTACAATACACATACTAGAAGAATCCTGTGACTCGTCGAATCCTAGTAACACTGATGCATCTACAGACCATCACCGTGCGGTGCCAGTGAAAGCTGAAGGGCCTTGGCCTGCAAGTGCTGAAGACTCAAACAGCAGTACAGATGCAGCTGACATGTCACAAGACATGAAGGTATATCAGTGTTCTGTCTGTAAAACTGAGTATAATGAAAGACATAAATTGCTTATCCATGAAATCACAGAACATATTGTTGAAGAGAAAGAGCAGAAATTAATGCCTGTTCTACATAAGAAATACAAACGAGAACAGGCCGCATGTGGCATGTGCGGCCAAGTATTCAGTGGGAAGAAACCCCTGAGGCGACATATAAGGGAAAAGCACATCCCAGTTGAAAATATTTGTGAGTTTTGTGATGCTTATTACCAAAACAGAAGTCAGTTGGAGATTcatcgaagacttcacactaatgaaaaaccatttaaatgtgaaacatgtAATATTAGCTTCCATTTCAAGAAAGAGTTACAGCGGCATAAGCGTAGTATCCACGTACAAGTCAAGTCACTTACGTGTTCTATTTGCAATAAAACTTGTCCAAATAGGAATGCAATGTGGCGGCATGAAAAGATACATACAGATGAGAGGAATGTCTTATGTTATCTGTGTGGAAAGGTGCTGTCGAACCCTCAGAGTATGAGAGTGCACATGAGGACGCATTCCAATGACAGACCCTGCTCGTGCCCCACCTGTGGGAAGAGCTTTAAGGACAACACATCTGTCAGTAAACATATGTTGATGCATTCCACGTCAAAAAATTTTGCTTGTGATATCTGTGGCAGAGCATTCTACAGCAAAGCCCTAGTAAAGCAACATAAGCTGAGCCATTCAGGTGTTAAGCCTCACAAGTGTGAGACATGTGGTGCAGCATACAATAGGTTAGGAAACCTGAATCAGCATAAAAAGAAACATGCTGCAAATTCTCAGCCCATAGAAGATCTGTCCCATGAATGTGTCGTGTGTGGAAAGAGAATGAGATCAGAGTTGACATTGAAGTATCATCTGGCAAAAcatacaggagaaaagaagccatttgattgtgaggtttgtggtaaacgttttgttgctgtagatccataccgagtgcacatgcgtatacacactggggagcgtccttaccagtgtactgcgtgtggtaaaaccttccgcagctctttcacactgaagcagcatgctgcactccacagggatgagtgtccttatgcttgtcccttttgtgaacgcaaatttaaacgactccagtcactgattgtacataagcggacacatacaggtgagaagccacaccgatgtccgttgtgtggacgtgcgtttgctcagaaggGAGACATGTTGAAACATACTAAAACCCACAATAGAGACAGGCCTGTGACAGCCAACAAGGTAAAAGAGGAAAGAGTTGTTATGGAAATAGAACATATATCGGACCTTGCGCTCAGTGACTCAGAGATAACCAGCGAGTTTCTCATTGATATGCCAATAGTTGAAGTGGAAACCGAAATTGATTCAGGAATGCAAACTGAAATTAATGCAGAAATGCCATGA
- Protein Sequence
- MLLLYFRVYPNQRHDKVNIIKKPAHFIHVKSSNTAEAGDATIEHESAELLPVATKEVTIHILEESCDSSNPSNTDASTDHHRAVPVKAEGPWPASAEDSNSSTDAADMSQDMKVYQCSVCKTEYNERHKLLIHEITEHIVEEKEQKLMPVLHKKYKREQAACGMCGQVFSGKKPLRRHIREKHIPVENICEFCDAYYQNRSQLEIHRRLHTNEKPFKCETCNISFHFKKELQRHKRSIHVQVKSLTCSICNKTCPNRNAMWRHEKIHTDERNVLCYLCGKVLSNPQSMRVHMRTHSNDRPCSCPTCGKSFKDNTSVSKHMLMHSTSKNFACDICGRAFYSKALVKQHKLSHSGVKPHKCETCGAAYNRLGNLNQHKKKHAANSQPIEDLSHECVVCGKRMRSELTLKYHLAKHTGEKKPFDCEVCGKRFVAVDPYRVHMRIHTGERPYQCTACGKTFRSSFTLKQHAALHRDECPYACPFCERKFKRLQSLIVHKRTHTGEKPHRCPLCGRAFAQKGDMLKHTKTHNRDRPVTANKVKEERVVMEIEHISDLALSDSEITSEFLIDMPIVEVETEIDSGMQTEINAEMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -