Rluc000553.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010004108.1:25820-33507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.9e-06 0.00049 21.1 1.3 1 23 250 272 250 272 0.97 2 12 2.2e-05 0.0022 19.0 1.3 1 23 278 300 278 300 0.95 3 12 4.7e-06 0.00047 21.2 3.4 3 23 307 327 305 327 0.95 4 12 1.4e-05 0.0014 19.6 2.7 3 23 335 355 333 355 0.93 5 12 1.6e-05 0.0016 19.5 0.2 2 23 362 383 361 383 0.97 6 12 4.6e-06 0.00045 21.2 3.1 1 23 389 411 389 411 0.96 7 12 3.8e-06 0.00038 21.5 0.4 3 23 419 439 418 439 0.97 8 12 3.6e-05 0.0035 18.4 1.1 3 23 447 467 445 467 0.90 9 12 0.00038 0.038 15.1 0.5 1 23 473 495 473 495 0.95 10 12 3.9e-06 0.00039 21.4 8.3 1 23 501 523 501 523 0.96 11 12 0.0077 0.77 11.0 4.9 3 23 531 551 529 551 0.94 12 12 1.2e-06 0.00012 23.0 4.6 1 23 557 579 557 579 0.95
Sequence Information
- Coding Sequence
- ATGGTTCTGAACTTCAGCAGAATATGCCGGTTGTGCTTGAGTGATGATAAAACACTCTTGCCTCTCTTTAATACTGCAGAGAAAGTACAAGAAAAGATATATACCATTTCACCTACAATAGAGGTATATGCTGGAGATGGCCTACCAGCCCAGATATGCAAGGATTGTATCCATCAGGTCAACATATCGTACAAATTCATACGGCAGTGCAAGAAGTCAAATGCTACTCTGCGACAACACTTAAATAACCAGCAGCCACATGACACTCCAGTTCAGGCCCTTGGCAGTGAGACAGATATGACTGTTGATGAAGATGGTGATTCAGACTCTAGTGATGTAAGCTTCAAAGATGGTTCTGCGAGCCCTGATGAAGATGCTGTAGAACCAGAGAATGAAGTGAATACTGACACATGGGACAAAACTGAAACAGGCATCACATCATTAGGTAAGAATTCATCACAGGTCATGAAGGATGAACACATCATTGTGCCATACCCACACATAAAGGGCAGGAGAAACACTCCGCCAACAAACACTTCTATGTACCACCTGAAACATGAAGACATCAGTGTGTCAGATCAATGCATTAAGAAGACCAGCAGTGGCAGCACACCAACACCAGGCACTTCGACACAAGACATAAAGCATGAAGACATCAGTGTGCCAGAGCCGTGTATCGGTGGTGGAAGAAGCACTCTACCATCAAGCACTTCCTGTAATGTGGATAGTAATGGGGAATCAGAACAGTACACATGTGACATATGCAACAAGTCATTCAGCACTGAGAAAGATATGAAGAAGCATTCTCTTGTACACCCAGAAGACAAACCATACAGTTGTTCTGAGTGTGGGAGTTCTTTTAAGTACAAGTCAAGCCTAACAAATCACACAGTATTACATTCCCAAGACTCTCATTTGTGTACAGAATGTGGGAAGGTATTCCATTCCAAATCAAATCTAACTCAACACCTTGCCTCCCATTCTGAGGCCAGGCCACATCTCTGTTCTCTGTGTGGTAAATCCTTCAAATATAAATCAAATCTCAGCCAACATACAGCTCTACATGCTAGAGACATGCCCATACAGTGTAATGTTTGTGACAAGCAGTTTGGCTCCAAGACTGATCTCATGATTCACATCCTTTCTCACTTAGAGGAAATGCCACACCAGTGTTCAGAGTGTGGAAAATGCTTCAACAATGAATCTCAACTCTCTGATCATCAGGCACTTCATGCAGAAACCAACCAACATGGTTGCTCTGTCTGTGGTAAATATTTCAAAACAAAATACAATCTGACTGTCCACCAAGCATTGcacaccaaggataggtcacacctttgtactgtgtgtggtaaggctttcaagtacaagtctaaccttttggagcacagcgctctgcacgcagaagacaaacctttcctttgtactcagtgtggtaaagcatttggcggcaaatccaagtactctagccaccttgccacacactcggaagacaggccatatcagtgctccatatgtggcaagTGTTTCAAGCATAAGTCAAATCTATGTAATCATAAAGCATTACATGTGGAGAATGGGCCCCACCTGTGTAATGTATGTGGTAAATCTTTCAGCTGCAAATCTAAGTTCACAAGCCATGTTGCATCCCATTctgaagagagaccacaccagtgccctgtgtgtgggaaaagtttcaaatacaagtcaaatctatgtaaccataaagcattacatgtagaaaatggcccccatacatGCACACCAAAATTGTGTATGGAACAACACACACTTGTACCAACAGGACATTACCCAACAATCACAAGCGCTACAGCCTTATTCAAAGCAGGAAATGACTCAGCAGACTCTGCTCTATCTACACCTCACAATAGAAGTTCTTGCTAG
- Protein Sequence
- MVLNFSRICRLCLSDDKTLLPLFNTAEKVQEKIYTISPTIEVYAGDGLPAQICKDCIHQVNISYKFIRQCKKSNATLRQHLNNQQPHDTPVQALGSETDMTVDEDGDSDSSDVSFKDGSASPDEDAVEPENEVNTDTWDKTETGITSLGKNSSQVMKDEHIIVPYPHIKGRRNTPPTNTSMYHLKHEDISVSDQCIKKTSSGSTPTPGTSTQDIKHEDISVPEPCIGGGRSTLPSSTSCNVDSNGESEQYTCDICNKSFSTEKDMKKHSLVHPEDKPYSCSECGSSFKYKSSLTNHTVLHSQDSHLCTECGKVFHSKSNLTQHLASHSEARPHLCSLCGKSFKYKSNLSQHTALHARDMPIQCNVCDKQFGSKTDLMIHILSHLEEMPHQCSECGKCFNNESQLSDHQALHAETNQHGCSVCGKYFKTKYNLTVHQALHTKDRSHLCTVCGKAFKYKSNLLEHSALHAEDKPFLCTQCGKAFGGKSKYSSHLATHSEDRPYQCSICGKCFKHKSNLCNHKALHVENGPHLCNVCGKSFSCKSKFTSHVASHSEERPHQCPVCGKSFKYKSNLCNHKALHVENGPHTCTPKLCMEQHTLVPTGHYPTITSATALFKAGNDSADSALSTPHNRSSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -