Basic Information

Insect: Reticulitermes lucifugus
Gene Symbol: -
Assembly: GCA_026260175.1
Location: JAKCWW010005674.1:18124-23470[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00064 0.064 14.4 4.5 1 23 223 245 223 245 0.98

2 14 3.8e-06 0.00037 21.5 0.5 1 21 251 271 251 273 0.91

3 14 3.3e-05 0.0033 18.5 2.3 1 23 279 301 279 301 0.97

4 14 7.6e-05 0.0076 17.3 3.5 1 23 307 329 307 329 0.99

5 14 1.5e-07 1.5e-05 25.9 4.6 1 23 335 357 335 357 0.99

6 14 0.00023 0.023 15.8 2.5 1 23 363 385 363 385 0.98

7 14 1.4e-05 0.0014 19.7 6.1 1 23 391 413 391 413 0.97

8 14 9e-07 8.9e-05 23.4 0.9 1 23 419 442 419 442 0.98

9 14 0.00025 0.025 15.7 3.5 1 23 448 470 448 470 0.98

10 14 8.3e-08 8.3e-06 26.7 1.7 1 23 476 498 476 498 0.98

11 14 8.1e-07 8e-05 23.6 0.3 1 23 504 526 504 526 0.98

12 14 0.00012 0.012 16.7 0.7 1 23 532 554 532 554 0.95

13 14 3.4e-06 0.00034 21.6 2.0 1 23 560 582 560 582 0.95

14 14 0.00067 0.066 14.4 3.6 1 23 588 611 588 611 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00064	0.064	14.4	4.5	1	23	223	245	223	245	0.98
2	14	3.8e-06	0.00037	21.5	0.5	1	21	251	271	251	273	0.91
3	14	3.3e-05	0.0033	18.5	2.3	1	23	279	301	279	301	0.97
4	14	7.6e-05	0.0076	17.3	3.5	1	23	307	329	307	329	0.99
5	14	1.5e-07	1.5e-05	25.9	4.6	1	23	335	357	335	357	0.99
6	14	0.00023	0.023	15.8	2.5	1	23	363	385	363	385	0.98
7	14	1.4e-05	0.0014	19.7	6.1	1	23	391	413	391	413	0.97
8	14	9e-07	8.9e-05	23.4	0.9	1	23	419	442	419	442	0.98
9	14	0.00025	0.025	15.7	3.5	1	23	448	470	448	470	0.98
10	14	8.3e-08	8.3e-06	26.7	1.7	1	23	476	498	476	498	0.98
11	14	8.1e-07	8e-05	23.6	0.3	1	23	504	526	504	526	0.98
12	14	0.00012	0.012	16.7	0.7	1	23	532	554	532	554	0.95
13	14	3.4e-06	0.00034	21.6	2.0	1	23	560	582	560	582	0.95
14	14	0.00067	0.066	14.4	3.6	1	23	588	611	588	611	0.92

Sequence Information

Coding Sequence: ATGGATGATGTTAAAAGTGAGCCTGATTCAGAGAGTGACAGGGAGTTTGTTACGGCACAGTATGAGCCTCAGTTCATTAAAGTAAAAGAAGAACACATGCCAGAGGATGACGACGACGACAGCGAAGAAGATGAGACATCACACACCATTAGAAGTGATGAGGACTGTAGCGACGTACCGGACGAAGATATGGCAGAAGCGGTCATGTTTCCTATTGTTAAGACTGAGTATGACACCACCGACACTTCACAGAAAGATGGAGCCGATGAACACGCATTTGGCGCAGTAAACGACGATAAGTTCCAGGCATTAGAAGCCCCGTCTACAAAGGATGATCTGTCTGCAGACGAAAGTGAATACATGCAAGACAAACATGAGGTCAGATTGGAAGACTTGAAGAAACAAGGTCTTGTTGCTGGCAGCGGTGGACGAGCATCAGATACACAGCACTTCAGATACACTGGACATTTCATGCAGCAGAATGACGAACGTCGTGACCAAATGTGCAGTCAATGTGGTGCAACAGTTAAGGGACTCTCTGCAAATACATCAACACAAAATAATCAGAAAGTTCTTTGTAAAACCTGTATTAGAGGGGGAAGTTCATCTGCGAAGTTGAGAGGTGGCTCACAAGGCAGTAATGTTGGTGGTTCAGTGgaaaagtcattttcatgcgagttctgtaaaaaggaatttcaaaaacatgaatatttaatgaagcatttacgagtacataatgaagggaatccatttaagtgtgatgtgtgtggcgaaagtttctcaaggtatggcgatctcaaacggcattctgtggaacacaacggagggaaaccttatgagtgcaagttttgcaataggagattttcagagaagggaaacctgaagactcattctctaatgcacactggaaatatgccttatcagtgtcacttttgtcaaaagcaattcccacataacgcttacttgattggacatttgcgtatccatacgggtgaaaagccatatgaatgccatatatgtaataagcgtttcactcacaacagtgggttaaaaacccacatccgtgtccacactggggagaaacgatatcactgcacagtatgtgataaagtcttctccaccacatcaattctcaacacacattttcgtattcacacaggtgagaagccttatcaatgtcaaacttgtaaaaaatgtttccgttcaagcagcaatcttaaaatgcatacttatattcatacaggtggtaaaagttataaatgcaaggtttgtgaaaaaatattttccactacatcttcgcttaatttgcatatgctgcgtgttcattctggaaaaaaagaatatcagtgttcagtgtgtgagaaaagattttctgatgtctgtaaattgaagacgcattcgcgcatccatgccgaggaaaagccctacgcttgtaatatatgtgacaaaagattttcacatcgtccgaacctgaaccttcatatacgaactcatacgggagaaaagccgtattcatgtgacgtttgtgagaaacgcttcagttcaagtagtgcccttacaagtcacgcacgaattcacacaggggagaaaaaataccaatgcacagtatgcaacaaattgtttgcaaatagttcaactcttgttacacattcttatattcattcaggagagaaaccatatgagtgtgatgtttgtaagaagcgttttcgttctaacagtaatttaagaacgcattcgtatattcacacaggaggtaggcgatacacctgtgcgatatgtaactcacacttctcaagcaaatctaatcttaatacacattCTCTCCATGTTCATAAAATAATCAAGCAGCTGCCTCCAAACAGAGTATCTCGGCCTGTGCTTAGGGTAACTACAGACCCACTGCTTGTAAACGATGCAGCTGCAGAATCTGTGCTTCCAGATGTTCCTGTAACAGAGTCTGTGCTTCCAGATGTTCCAGTCACACAATCTCTACCTCCTAATCATTTTGTCACAAAAGTAGAGCCAGCAGATGTTTCACCCAGTGACACCATGTCTGAGACAGAAACTGATGATACCTAG
Protein Sequence: MDDVKSEPDSESDREFVTAQYEPQFIKVKEEHMPEDDDDDSEEDETSHTIRSDEDCSDVPDEDMAEAVMFPIVKTEYDTTDTSQKDGADEHAFGAVNDDKFQALEAPSTKDDLSADESEYMQDKHEVRLEDLKKQGLVAGSGGRASDTQHFRYTGHFMQQNDERRDQMCSQCGATVKGLSANTSTQNNQKVLCKTCIRGGSSSAKLRGGSQGSNVGGSVEKSFSCEFCKKEFQKHEYLMKHLRVHNEGNPFKCDVCGESFSRYGDLKRHSVEHNGGKPYECKFCNRRFSEKGNLKTHSLMHTGNMPYQCHFCQKQFPHNAYLIGHLRIHTGEKPYECHICNKRFTHNSGLKTHIRVHTGEKRYHCTVCDKVFSTTSILNTHFRIHTGEKPYQCQTCKKCFRSSSNLKMHTYIHTGGKSYKCKVCEKIFSTTSSLNLHMLRVHSGKKEYQCSVCEKRFSDVCKLKTHSRIHAEEKPYACNICDKRFSHRPNLNLHIRTHTGEKPYSCDVCEKRFSSSSALTSHARIHTGEKKYQCTVCNKLFANSSTLVTHSYIHSGEKPYECDVCKKRFRSNSNLRTHSYIHTGGRRYTCAICNSHFSSKSNLNTHSLHVHKIIKQLPPNRVSRPVLRVTTDPLLVNDAAAESVLPDVPVTESVLPDVPVTQSLPPNHFVTKVEPADVSPSDTMSETETDDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00396515;
90% Identity: iTF_00370373;
80% Identity: -