Rluc003265.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Reticulitermes lucifugus
Gene Symbol
ZNF236
Assembly
GCA_026260175.1
Location
JAKCWW010009443.1:1-23614[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00047 0.047 14.9 8.6 1 23 21 43 21 43 0.98
2 20 6.5e-06 0.00065 20.7 1.2 1 23 49 71 49 71 0.99
3 20 0.00054 0.054 14.7 0.4 1 23 77 100 77 100 0.95
4 20 9.2e-05 0.0091 17.1 1.4 1 23 110 133 110 133 0.97
5 20 7.6e-07 7.6e-05 23.6 2.1 1 23 267 289 267 289 0.98
6 20 1.6e-06 0.00016 22.6 3.4 1 23 295 317 295 317 0.99
7 20 6.8e-06 0.00068 20.6 1.6 1 23 323 345 323 345 0.97
8 20 9.8e-05 0.0097 17.0 2.3 1 23 351 373 351 373 0.97
9 20 6.1e-06 0.00061 20.8 4.2 1 23 439 461 439 461 0.99
10 20 7.7e-06 0.00076 20.5 2.0 1 23 467 489 467 489 0.99
11 20 1.3e-06 0.00013 22.9 0.7 1 23 495 517 495 517 0.98
12 20 0.00013 0.013 16.7 7.6 1 23 523 545 523 545 0.98
13 20 7.7e-05 0.0077 17.3 5.3 1 23 887 909 887 909 0.99
14 20 0.00049 0.049 14.8 2.4 2 23 915 936 914 936 0.97
15 20 2.8e-06 0.00028 21.9 1.3 1 23 942 964 942 964 0.97
16 20 0.00053 0.053 14.7 1.6 2 23 971 992 970 992 0.96
17 20 8.1e-08 8.1e-06 26.7 0.7 2 23 1074 1095 1073 1095 0.98
18 20 0.014 1.4 10.2 6.6 1 23 1101 1123 1101 1123 0.97
19 20 2.3e-05 0.0023 19.0 3.1 1 23 1129 1151 1129 1151 0.97
20 20 0.00019 0.019 16.1 2.3 1 23 1157 1179 1157 1179 0.98

Sequence Information

Coding Sequence
GTAAAAGCTTCACTGTCACACAAGAGTCATAAACGTAACATAGATCGAAGCACTTTCGTCCATAAATGTGATACGTGTCACAAGTGCTTCCAGAAACCAAGCCAGTTGGTCCGACATAAAAGGATCCACACGGGTGAGAGGCCATATAAGTGCCAATTATGCTCAAGGGCTTTCAACCAGAAAGGCTCTCTACAGATTCATATGTCCAAACACAATGGTATTAAACCATTTCATTGTGAATTTTGTGCTGCTGCTTTCAGTCAAAAAGGTAACCTCCGTGCTCACATAGTACGAGTTCATACAATTCCAAACTCGGGAGAACAGGTCTATAAATGCATGGAGTGCCCATGTGTGTTTAAAAAATTGGGAAGCCTTAATGCACATATGAGTCGAATGCACTGCGGCGATGCTACACAGAAGACTGAATTATCAGATACGTCTGATGCATCCCACATGGTGAATGTGCGAGCTGTGTTGTCACAGTTGGCAGAACTGGAAGCAGATGTAGCAGGAGACAAAACCAAGACACTTGACCAGCCAAGTGATGCAGATATCCTGCAGCAAGCCTTGGTTAATAGTGGCCTGTCTGGGAAGGATCAGCCTGCTGTTCAAGGACTGCAAGATAGTGCTTCTAAGCAGGAAAACAAAATGAAGGATGATATCAAAGACGAGAGTGGAACAGTTCGCCAACACAAGGACACCAGCACTACCAGTTATATCACACTTGCTGACAGAGGACTAGATGGAACTGTGAGGAGATACATCATTCGGCAACGTCGTGTAGGGACAGTTCGATGGCATCAGTGTTCATACTGTTCTAAAGAATTCAAGAAACCATCAGATCTAGTGAGACATATTAGAATACACACACATGAACGTCCATACAAGTGCACTCACTGCTTCCGGTCCTTTGCTGTTAAGTCCACCCTCACTGCTCACATTCGCACACACACTGGTGTCCGGGATCATGTGTGTTATATATGCCTCAAGAAATTTTCTTCTGCAAGCAGTCTTAAAGTTCACATACGGATGCATACAGGTACCAAACCATTTGCATGTCAGCTCTGTGACAAGACATTCCGAACCACGGGTCATCAAAAGGCTCACATGTTATCACATACCAAAGAAAATTGTGGAACTACAGAAGGAAGGGTTTCAAGGCGGAAGCTGGTGAGACAGAAACCTACTCTTCCACTGTTACCAGAAGTTGCGTTGCAGGAACCAATTATTATCACAAATAATGGATTTGTGCAAGCTGTGGCCCGAAACAGTACTGTTTTCCTTCCTAGTAACACTGTGAGTCTGgatcgaccatacacatgtcatgtgtgcaatgcagcattccgtaaattaagtcatctcaaacagcacatccgtatgcacactggtgaacgtccatacaagtgcaacctatgtgacagGCACTTCATATCAAATGGGGTACTGAAAGCTCACCAGCGTACACATGAAGGTGTAAAATCTTACAAGTGCCCTGAATGTAGTAACATGTTCTCTACAAATGGAAGCTTAAAACGTCACATGGGTACACACAGTGACTTGAGACCCTTCATGTGTCCATACTGTCATAAGACGTTCAAAACATCTGTGAACTGCCGCAAACACATCAAAACACATAAGCATGAACTGGCTCTGCAGGTTGCACAGCAGACAGCTAAAGAAGATGGAACTAATATACTTAACACTATACCAGTAAGTGGACAGGGTCCTGCTGTTGTGACAGAAAGTACAAACTTCCCTCCTGAAGGTTTGGGTCCAGATTTTACCCAAGCATTTTCAGATCAGCCATTTCAGGTGGCATCAACCAGTGAGCAGCAAGAGCAAGAAGAATCAACATTTGCCCAGAACACACTCGTTGATACACTTACGTCTGGTCCTCTGGATGATAGCACTGATCCTGTAACAGCTCCAGCAATGATAACACACACTTTGCATGCTGATGCCACAGGGACCATTACATTGCCAAGTCTTGCCGGCCAGCATACCTTGACACAGGAAAATATCCGTGAAATTGAGCGTACATTGAACGAGCAAATTTTTGGCACTTCTGCAAATGTAACATCGGATCTTGTAAGTGTTGGGGGAGCATCCAGTGATCTGGCCGCAAGAGTTGAAGTTGGAGGCAGTGACAGTGAAGTTGAGTCTACCACAACAGAAGATTTAGCACGTACTCTTGGGGCCACTTCTTCTCCATCAGCTCAGCCTGATGCCTCAACACTAGGCACTTTGTCAGAAGGGCCTAAGGATGATGGCAGAAATAAGAATACAGCAGAACCTGCCAGTAACAGTAGTGTGTTTGGAACCACTTTTGATTCAGCAGGTTTTGATTCGTGTGTTTTCTCAGCAATTACTCTTCCGAGTGATGCTCTAGAATTAGAAGGTCTGGGATCGGGTTCTGCCATGACCACCAACATGGCTAGCATTCTGCCTCCATCTGGGGATGCAATGCCTGAACCTGTGGCTGCAGCAGCATCTGCCCCTACTTCCAAGTCTGAACTCATAGTAATGTCTCCAATGGATGGtccagttgccgctgctgctgctgccgctgcagcagtggcagcagatgaagcagataaagataagaaCTATGTTCCAGGAAGACCTTTTAGTGCAGATGCTCCACCTGGTGAACGGCCTTTCAAATGCAAACAATGCAGTCGTGCATTTAAGAAGTCATATCATCTGAAGGAACATGCAAGAAGTCATGTGGGAAAGAATTTAAGCTGTACATTATGTGAAAGAAAGTGTACTACCTTCGGAGCACTCAGGGCACATATGAAAACACATGATGGCACTAGAGATTTTGCGTGTGACTTATGTGGTTGCCGATTCACAACAAGTGGGTCTCTGAAACGCCACATGATTGTCCATAGTGATGAAAGGCCATTGAAATGCTCTATCTGCAATGCAATGTTCCGGACAGACCATTTGTTACGCAGACACATCACACTACATGAACCAAGAGAGAGAAAGGGGAAACTGGTAGCAACAAATCCATTGCAGCCACCACGTGGACGCCGCCGTGCAGCTGTTATCCGACTGACTGCAGAAGAAACTCAGGTTTTAGCTCAGCAACCTCTAGACAATGCAGCTACTGTCTCAGAAAAAGTACTGATTGCTTCTGTTGCTGAGAAGGACCGCATTAGTGAACTGAAGGACCCTGAACAGCAGTACAATATGGAGCCAATTCATCCAAATCAATGCAAATACtgtccgaagagtttccgaaagccatcagacctagtgcgtcacattcgaatccatacaggagagcggccataccggtgtgcatgttgtaataaatgcttcactgtaaagtcaacattggacagtcaccttaaaacccatggtggacagaaactctttgcctgccatgtctgtGGTTGCCTGTTCTCCACAAAAGGGAGCCTCAAAGTACACATGCGTCTGCATACAGGTGCTAAACCTTTCAAATGTCCACTCTGTGAGATGAGATTTCGTACATCGGGTCACCGTAAAGCCCACCTTATGTCTCATATGAAGCATGTGACTGGTGACAGCAAACTTCCCTCTCAACTGACCATATCTGCACGTCGAAGCAAGCAGGTTCCTGACCAACAGCAAGAGCAGGAGTCAGAGCTACAGAACCCAACAGCCAGCACCACATCAGAGCTAGTGGCTGACACCATGACACACATAACACTGGATCCTGCTACACTAAGTAGCCTGATACCAGGAGAACCATTCAACTCGTCACTGTTGACTGCAACAGCTGATGGAAATCATGTTGTGGGTAACTTTCAGCTGCAGCTGACTGATGGTTTACAGATAGCTGGCGTAGATCCGTCTGGAACCGTCCATTCCTATACCACACAGGCTGTTCAGCTGGATGAGGCTCTTTTGCATCAATTCCAGTGGATGGAAGGCATTGATGAGCCACATGCTGAGACCACTTTAGTCTCAGAGACAGAACACCAGGTTGACCCCTGA
Protein Sequence
VKASLSHKSHKRNIDRSTFVHKCDTCHKCFQKPSQLVRHKRIHTGERPYKCQLCSRAFNQKGSLQIHMSKHNGIKPFHCEFCAAAFSQKGNLRAHIVRVHTIPNSGEQVYKCMECPCVFKKLGSLNAHMSRMHCGDATQKTELSDTSDASHMVNVRAVLSQLAELEADVAGDKTKTLDQPSDADILQQALVNSGLSGKDQPAVQGLQDSASKQENKMKDDIKDESGTVRQHKDTSTTSYITLADRGLDGTVRRYIIRQRRVGTVRWHQCSYCSKEFKKPSDLVRHIRIHTHERPYKCTHCFRSFAVKSTLTAHIRTHTGVRDHVCYICLKKFSSASSLKVHIRMHTGTKPFACQLCDKTFRTTGHQKAHMLSHTKENCGTTEGRVSRRKLVRQKPTLPLLPEVALQEPIIITNNGFVQAVARNSTVFLPSNTVSLDRPYTCHVCNAAFRKLSHLKQHIRMHTGERPYKCNLCDRHFISNGVLKAHQRTHEGVKSYKCPECSNMFSTNGSLKRHMGTHSDLRPFMCPYCHKTFKTSVNCRKHIKTHKHELALQVAQQTAKEDGTNILNTIPVSGQGPAVVTESTNFPPEGLGPDFTQAFSDQPFQVASTSEQQEQEESTFAQNTLVDTLTSGPLDDSTDPVTAPAMITHTLHADATGTITLPSLAGQHTLTQENIREIERTLNEQIFGTSANVTSDLVSVGGASSDLAARVEVGGSDSEVESTTTEDLARTLGATSSPSAQPDASTLGTLSEGPKDDGRNKNTAEPASNSSVFGTTFDSAGFDSCVFSAITLPSDALELEGLGSGSAMTTNMASILPPSGDAMPEPVAAAASAPTSKSELIVMSPMDGPVAAAAAAAAAVAADEADKDKNYVPGRPFSADAPPGERPFKCKQCSRAFKKSYHLKEHARSHVGKNLSCTLCERKCTTFGALRAHMKTHDGTRDFACDLCGCRFTTSGSLKRHMIVHSDERPLKCSICNAMFRTDHLLRRHITLHEPRERKGKLVATNPLQPPRGRRRAAVIRLTAEETQVLAQQPLDNAATVSEKVLIASVAEKDRISELKDPEQQYNMEPIHPNQCKYCPKSFRKPSDLVRHIRIHTGERPYRCACCNKCFTVKSTLDSHLKTHGGQKLFACHVCGCLFSTKGSLKVHMRLHTGAKPFKCPLCEMRFRTSGHRKAHLMSHMKHVTGDSKLPSQLTISARRSKQVPDQQQEQESELQNPTASTTSELVADTMTHITLDPATLSSLIPGEPFNSSLLTATADGNHVVGNFQLQLTDGLQIAGVDPSGTVHSYTTQAVQLDEALLHQFQWMEGIDEPHAETTLVSETEHQVDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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