Rluc010461.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010000735.1:23232-41446[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-08 2.6e-05 24.5 0.0 7 40 156 190 154 192 0.90 2 2 4.2 5.7e+03 -2.2 0.1 30 38 413 421 413 424 0.89
Sequence Information
- Coding Sequence
- ATGATCGAGAGTGGGAGAAGTATGGCTGATGTTTCAAGGGAGGTTGGATTGTCATCATCTACTGTGTCTACTATTTGGAAAGTCCGAGACTCTGTGAAAAGTGCTTTTGAGAAGAACATGTTAGGTAGTAAGAGGCTTCAGAAACCATCAGTGCGTTACGATGTTGAACGTGCTTTGTTTCAATGGTACGCTATGAAAAGAGCAGCAAACGTGGATGTGAGCATGTCAGTGCTGCAACAGAAGGCAGAGGAATTTGCTAAGCTGTTAGGGTGCCTGGGTCAGCTGAATTTGCTGATCCAGCGACACGTGCCCCTTCCCCTCCCATTTGAAGCCCCTTTGATGTCAGAGCCTTCCCCAGCTCCTCAACTTGAAGCTGCTGATCTGACAGATGCCACTGTTGATACGTTGCTCCGATCACTCGCAGGCGACGTCATGTTCCGTAAATATTCTGTGCAAATCGTGACTCAGGCATTGGAAGCAGTCCTCAAAGAAGGCACAACTGTGAGTGAGGCATCTCTGAGATTTGGAATCAAGCGGTCCACACTGCAGTTCTATCTGAAGAAGTTGAACGTTGGTGGAGGTGGGATGTATTGGTGTCAACACTGGGAGACACTTGCAGAAGAGATGGGTATAGATGTGAAGGATTGTCAGGAGATCGTTGATGGGGTAGAATGGATTCACGTGGCTCAGGATACAGACCAAATAATTGGGTTTGCGCCATGGCATGTTGCAGACCAGTCAAGGGATGAGGTATTCATGGCAGCGCAAGAATCTGTTGGTGCTCACAGGGATTCACAAGCATGGCTAATGGTGTCTGGATCACAGACAAATAGTAGGTTTCTCCAAGGATCGATGTCTATGGCAGCTTGGACAAGAGGCAGTGGTAATTCTGGTACTGGCTCTAACTCGTCTGCCGGCATTGTGGCACCTCCATACCAAGACTTGATCAGTCAAGGCAACTCGAGCAAGTCTTTGAGTTGCCCTCGCTGTGACCGCAAGTACGCAGTACTTTACACATTAGAACGTCATCTACGTTACGAGTGCGGTGTTGAAAAACAGTTCTCGTGTGGCGTTTGTTTTAAACGTTTCAAGCGAAGTGATGTGCTTAAGGTACACCAGCGCATGGTCATATCAGCTCAGGGCCTGCCGCATGTATACCAGTTTGAAGGTGTTTCATCTGAGGAAGATGGCATTCAGCTTCATGTTTGCCAACTGTGTGGAAAAAGCTACAAAACTCGCTCTACACTTAACAGGCATCTTCGTTATGAGTGTGGGAGAGCCCGCTTCAAATTAGAATGCTCAATTTGTGGCAGGAAGTTCTCGCGGCCTGATAACTTGCGTCAGCATGCTGGTATCCATATGCCAGAATATTCTGCCTATAAGGCTAGTAGTATGAGTGGCAGTGGCAGCAGTGGATGTGGAAATTACCAGGCTATGGACAGTATATGA
- Protein Sequence
- MIESGRSMADVSREVGLSSSTVSTIWKVRDSVKSAFEKNMLGSKRLQKPSVRYDVERALFQWYAMKRAANVDVSMSVLQQKAEEFAKLLGCLGQLNLLIQRHVPLPLPFEAPLMSEPSPAPQLEAADLTDATVDTLLRSLAGDVMFRKYSVQIVTQALEAVLKEGTTVSEASLRFGIKRSTLQFYLKKLNVGGGGMYWCQHWETLAEEMGIDVKDCQEIVDGVEWIHVAQDTDQIIGFAPWHVADQSRDEVFMAAQESVGAHRDSQAWLMVSGSQTNSRFLQGSMSMAAWTRGSGNSGTGSNSSAGIVAPPYQDLISQGNSSKSLSCPRCDRKYAVLYTLERHLRYECGVEKQFSCGVCFKRFKRSDVLKVHQRMVISAQGLPHVYQFEGVSSEEDGIQLHVCQLCGKSYKTRSTLNRHLRYECGRARFKLECSICGRKFSRPDNLRQHAGIHMPEYSAYKASSMSGSGSSGCGNYQAMDSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289276;
- 90% Identity
- iTF_01289276;
- 80% Identity
- iTF_01289276;