Rluc017352.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010003399.1:44285-47005[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-14 2.7e-11 43.7 0.1 3 45 37 79 35 79 0.92 2 3 7.8 1.1e+04 -3.0 0.6 8 11 168 171 163 182 0.55 3 3 8.2 1.1e+04 -3.1 0.0 29 43 197 211 197 212 0.81
Sequence Information
- Coding Sequence
- ATGCTGTCCCAGTCCTTCCCAGGCGATGTCCGAGGTGTATCATCTGGAATTGCAACCTATGTGCCTACACAAAAGCCAGAATGGAAGCGGTACAAACAGTATACAAGAAATGACATAATGTCTGCTATTGAAGCAGTTCGAAGTGGGATGTCTGCTCTCCAAGCTTCTCGCAAATATGGTGTTCCTAGCCGCACATTGTATGACAAAGTGAAAAAAATGGGAATCACTACAAGCCGACCATTCAACAAGCGTGGTTCGAATGTAAGTACCGGAGGGGGTAGTTTCTTTGGATACAGCAGCAGTGGAGGTAATGGTGGGATAGGGAGTAACTCCTTGGGAGGGGTTTTTGGTGTGGGTGGAGGAGGAATGTCTGAAGGGGAAGAACCAATGGTGAATCCATCTCCAAGTGGCACAATTGTGGAACCAATTTTTCTGCAACATGCATTGGATGGGATGAAGCGTGAACTTGGTGATCGGGAAGCTATGGCTGCCATGGCTGCTGCTGCAGCTGCTCATGCAGCTTCATCGGTTAGGAGTGGCAACTCATCATCAAGTCCAGGGGAGAATGGCAATGGTCATTCACCTAGCCCAAGTCCAAGTCTAATTAAGTACATACGTAGTCATAATAGTTTGACTCCAAGCCCAGCAGCTGGAAGCAATGAACTGCTTCTTCCCAGCAGTGGTAATGATGCAGCAGACGATGATGAGGATCAAGTAGAAGACTTGTCAGTTGCTCGAAAACCTGAGCCAATGCGTGTCATCATGCCTCCAATGAGCGCTGCAGTTGCATCTACAGCGAAAAAGGAAGACATGCATGAAGAAGACATTCGGGATCATTGTACCTCTGATGAGTCACATAATACATCTATGGAGACAGCAGAAAGGGACTGA
- Protein Sequence
- MLSQSFPGDVRGVSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRSGMSALQASRKYGVPSRTLYDKVKKMGITTSRPFNKRGSNVSTGGGSFFGYSSSGGNGGIGSNSLGGVFGVGGGGMSEGEEPMVNPSPSGTIVEPIFLQHALDGMKRELGDREAMAAMAAAAAAHAASSVRSGNSSSSPGENGNGHSPSPSPSLIKYIRSHNSLTPSPAAGSNELLLPSSGNDAADDDEDQVEDLSVARKPEPMRVIMPPMSAAVASTAKKEDMHEEDIRDHCTSDESHNTSMETAERD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -