Rluc007085.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010003523.1:1873-3983[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5 6.7e+03 -2.4 0.0 23 30 32 39 32 43 0.79 2 2 1.6e-17 2.2e-14 53.6 0.0 1 44 156 200 156 201 0.95
Sequence Information
- Coding Sequence
- ATGCCTTTGAGATTTGGAACCACTCGCCCAGTGACATGGTGTCACATCCCAGAAGACCTGAGTCCTCACCACTGTGAGAACATAAGTTCTCACCAGCGGATTTATGGCTTACCATGGACATTGCTGGAGCATGGTTGTCCCCGGTTTGCACTGTCGTCATGTCAAGCCAGCCTGTCGGTACAGGCCTCATCTGCCTTCTGTGCTCCAGAGCCCCCTCCTAACCCAGCAGCCGTTCGCAGGGATATCCCTCAGTATGCTGGACACTCGTATCAATCGCACCAGATGCTGCCAATGCCCTCCTGTGCTGTTATGAGTGCATATGGACCTCCTTCTTCAACACCCCTCAGCCCGTGTCCTAGTTCATGTCCAAGCCCGTGCCCTAGCCCATGCTTGAGTCCAGTTTTTGTATCGGCTGGCTCGGGACAAAATTCTCCATCTCGCCGAAAGCGCAGTATTAATCCCCAGTCAGAAGAGAACTTCTTACGTGCATTAGAAGCTGTCCGTTTTGGTGGTATTGGATTCTGCAAGGCTGCCCGGATGTATGGTGTCAACAACCGCACTCTTTGGCTTGAATACAAGAAGCGTGGCTATCCAGTTACTCGACCCAGCCTCAAGGCGCGTGTGAAACAGAATTTGCCTACGTCGATGTTACCTCCAGCTTCTAATGAGATGGAACCTCCTCCAAATGTAACTGCAACCACAATCATGGGTCCTCCACCACCTGCAGCACACATGCAAGTTGGAGGTTTTTTGGATTCACATCATGTTGAATTTGCACATCCACAAGGACCTGCAGCCCCTCCAAGGCAAAGGTCACAACGAGATAATACTGACAACTTGAGCGATGCATCATCAAACTCTCACCATGACATTAATAGTAACTATAATCAAATATGA
- Protein Sequence
- MPLRFGTTRPVTWCHIPEDLSPHHCENISSHQRIYGLPWTLLEHGCPRFALSSCQASLSVQASSAFCAPEPPPNPAAVRRDIPQYAGHSYQSHQMLPMPSCAVMSAYGPPSSTPLSPCPSSCPSPCPSPCLSPVFVSAGSGQNSPSRRKRSINPQSEENFLRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPVTRPSLKARVKQNLPTSMLPPASNEMEPPPNVTATTIMGPPPPAAHMQVGGFLDSHHVEFAHPQGPAAPPRQRSQRDNTDNLSDASSNSHHDINSNYNQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -