Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.1 1.5e+04 -3.3 1.0 15 18 133 136 132 137 0.77

2 5 0.055 7.3e+02 0.9 0.7 4 10 166 172 165 172 0.94

3 5 2.2e-07 0.0029 18.1 13.5 4 18 184 198 182 199 0.93

4 5 9.8e-09 0.00013 22.4 9.0 1 19 235 253 229 253 0.85

5 5 1.2 1.6e+04 -3.4 1.1 6 10 280 284 279 284 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.1	1.5e+04	-3.3	1.0	15	18	133	136	132	137	0.77
2	5	0.055	7.3e+02	0.9	0.7	4	10	166	172	165	172	0.94
3	5	2.2e-07	0.0029	18.1	13.5	4	18	184	198	182	199	0.93
4	5	9.8e-09	0.00013	22.4	9.0	1	19	235	253	229	253	0.85
5	5	1.2	1.6e+04	-3.4	1.1	6	10	280	284	279	284	0.83

Coding Sequence: ATGGCCAGCAATAATAATCAAAGATTCAATCAAAACCCAAACAATAGCGATTCATACAACAATAAACAACCAAAGTCCAGTGAAAGTAATCGTTCACCACCTGATCGGATACAAAGTTCAAATGTAAGAACTACTACATCCGAATTGAATCTGCAAGATTTAGTAAGTAGATCAACATTACGAGCCACCGCAGTTGAATTTGTACCGAGAAGTCGTAGATCTCAAACAATAATAAGACAACATTCAAGAACAGATTCCATGATAGAAGCTTTAAGTAATACGCACATTTCCGATAACAATGCTTCAATATCATTGAGCAGCAGTGGTGGAGCTATTAGAAGGGTTCCCAATCAGAATGATTACATTGATCGAAATGAGATTGACAGAAAATGGCGATGTCCGTATTGTGAGTCTTTCTTCAGAAGTATACCTGAAGAATATTATTGCTTTTGTGgtaaaTCTAAGGATCCAGAATTACAAAGATGGCATGAACCACATAGCTGCGGTAGAACATGCCTTCGTACAGATAATCGTGTTCGTCAATGTCCTCATGAATGTCAACGTATATGTCATTCGGGAATgtGCCCTCCATGTGATCTTATGATCACACGTTTATGTACCTGCGGTAAAACAAGATGGCGTTGTGTATGCAATTCTGATTTACCTATATCATGTGGTTTAATGTGTGGTTTGGATCTAAATTGTATGATCCATAAATGTGAAAGAATATGTCATGCAGGTGATTGCGATGAttgtacgaaaaaaattgaacaaatatgtTATTGCAAGCGTGAAAAGCGAATAGTTTATTGTGATTATAACATACAAAACTATGAATGTAGTTCAAAATGTcggaaaattttattttag
Protein Sequence: MASNNNQRFNQNPNNSDSYNNKQPKSSESNRSPPDRIQSSNVRTTTSELNLQDLVSRSTLRATAVEFVPRSRRSQTIIRQHSRTDSMIEALSNTHISDNNASISLSSSGGAIRRVPNQNDYIDRNEIDRKWRCPYCESFFRSIPEEYYCFCGKSKDPELQRWHEPHSCGRTCLRTDNRVRQCPHECQRICHSGMCPPCDLMITRLCTCGKTRWRCVCNSDLPISCGLMCGLDLNCMIHKCERICHAGDCDDCTKKIEQICYCKREKRIVYCDYNIQNYECSSKCRKILF

Sequence clustering based on sequence similarity using MMseqs2