Rmax007018.1
Basic Information
- Insect
- Resseliella maxima
- Gene Symbol
- -
- Assembly
- GCA_029041755.1
- Location
- JAQOWM010000294.1:12165-15650[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.33 31 5.9 0.6 2 19 37 54 36 56 0.93 2 17 0.003 0.28 12.3 1.5 1 23 76 98 76 98 0.95 3 17 0.26 25 6.2 0.3 1 23 104 127 104 127 0.86 4 17 0.0022 0.21 12.7 1.5 1 23 130 153 130 153 0.95 5 17 0.00076 0.072 14.1 0.0 2 21 162 181 161 182 0.93 6 17 9.9e-05 0.0093 16.9 1.4 1 23 190 212 190 212 0.98 7 17 0.004 0.38 11.9 1.8 3 23 220 240 218 240 0.96 8 17 0.0014 0.13 13.3 1.2 1 23 246 268 246 268 0.94 9 17 6.2 5.8e+02 1.8 2.9 1 21 274 294 274 295 0.94 10 17 0.0044 0.41 11.8 3.3 1 23 575 598 575 598 0.97 11 17 0.78 74 4.7 5.4 1 21 610 630 610 632 0.93 12 17 0.03 2.8 9.1 3.2 2 23 668 690 667 690 0.96 13 17 0.00015 0.014 16.3 0.2 1 20 702 721 702 723 0.94 14 17 0.00047 0.045 14.8 0.7 1 23 731 755 731 755 0.98 15 17 0.0013 0.12 13.4 5.0 1 23 761 783 761 783 0.98 16 17 2e-05 0.0019 19.1 1.4 1 23 789 811 789 811 0.97 17 17 0.0086 0.82 10.8 3.8 1 23 817 839 817 839 0.96
Sequence Information
- Coding Sequence
- ATGGTTCGAAAATCTCAACGGCAAAAGGATgcaaacattaaaaatgtttcaaatcgTTCGGATAAATCGgacaatgatgaaaatgagcGAGATGACGATGATggattaaaatgtaaatattgtgatgTATTTTCAACGACAGCCAAAGATAGGCGAAAACATGAAGATGATTGTGAATTAAAGGCAACAGCAAATGTTTTTACTACATCAGATGGAAAATTGCGATTTTTGTGCacgGTATGTAATCAATTATTCAAGTATCAAACTGGGCTTAAAAAGCATGAACTACGACATCAACCACCTGGTGGCTTTATCTGCTCTGAatgcaatgaacattttataacTGATGCTGAGCGTTCTATTCATAAGGAAATCGTTCACAAGATATTCAAGTGTTTAATCTGCAATGAAAAGTGTTCATCGGAAGaggaatttttgaaacatATAAATGATTTGCACGAAGGTCGGGATCGAGAATATGTTGTATGTGGTGAATGTGGCGCTCAATTTCggcaaaaaaatcaactgagATTGCATATTGAGTCAAAATGTGGCACTATTCGATGTTATACATGCAAACAATGCAATTCAAAGTTCATGACACAAAACACCCTCAACGCTCACATGCTAATTCATACTGGAGAGAAGAAACATTTATGTAATTATTGTGGGAATAGTTTTCTGAGCCGAggtcaattaaaaatacacGAACGTAGTCATACAAAGGAGAAACCATACAAATGCCTGATTTGCAATAAGGCATTTTCTCATCGTGAAAGCGCTGTAACTCATTCGTCCATACATACTGGCATTAAACCATATCAATGTCAATGCTGtggaaatcaattttcatgtaTTGGAAATCTTATAAAACATCGTCGAATACGACCGCAAACATGTGGATTGCCACagtatacaaatacaaaatgtgcacCAAGGGCAAGCACCAAAGTTCCAGGAAGTTTGActttaaaaaaagaatatcCAGTAAAGCGTGCGTATGCAAAGCGAAAAATCGTTTCGGTACCAGAATTATTATCCGTTCGTGCTGAATTAACAAATCAAActgaatcaacaaaaattgtatcaaGCACTGCACAACAAAACGAATTTGATGAGTATTTAATATTAAACTCAATTGAATCGAGTGAAAACATTGAATcgaataatttcgaaaaaactGAATTAGATGAAATGGATACAGAACCATCTGCTGATTgcttaaatatatttgaaccATCAGTATTGAATGCACCatttacaacaaatgaaaatagcagCAACCTATCATATAATATTGCTAAAGGTAGTTTAATTGTTCTTACCACCGATGGCAATTATATGATCACCAATTTGAGCAATGAAATTAAGaaaccaattgaaatcaaagttAATCCACCACAAATGGAACAagttatcattttgaatagcAATGATATACAATTTACCGATGTGGAAATCGATTgtcaaaatgtgcaaaatattttgaatgaaaaaagtACAAATACGgatacaaatatacaaattctGGAAGATTCGACGATGAAAAATCCAATATCAATCGATGGTGGCCAAGATGATGAACTCTTAAAAGAAGAGTATTTGGATAATACTATTCAACATTTGGAAATTGTACCCATCGATGCGACGGTCATAAATGATTCAGTCAATGAGAATGTCATAAAAACTGAACcagaaaaatcgaaacaaactGTCGAAATCCATAGGTGTGAATTATGTTCGATGCAattcaaacaagaaaaaacattgCTAAAACACTTGGATACAAAGCATAACATTCAGTGTGATATCATTAAAAAggatttattcaattgtaaatattgtgataagcaatatttacattcaaaacTATTGGATCGACACATATTGTGTCATGGTCCAAATGGTAATTTGTTGCATAAATGTTCCTGTTGCCCATTATactttgaaacaaaatttaaaatgcagCTGCATGCAAAAAAGGAACACGAAGATCGTTTAAAATGCGAATATtgtcataaaatttataatgatATCGATTGCAAAGCGGCTCACATacgaaaatttcataaaaaaaccGGTGCACCTCAAAAGAAGTatacatttgtttgttcaaaatgtggtaaaaaatttaattcacgCGTATCATTAGCAGATCATGAGCAAGGTGATTGTGGCCGATCACCAATGTACAAATGCAATTATGATGGTTGTGGCAAATCATTGCATAGTTTGGgttcattaaaaattcatcaattgattcatACCGGTGATTTACCATTTTCATGCAGTTTTTGTAAGAAAAAATTCCGTACACATGGCCAAGTTAAAGTTCATGAACGTAGTCATAGCGgtgaaaaaccattcaaatgtAATCAATGTCCCAAAGCGTTCGCTCATCGAGAATCATTATTAACACATTTATCATTGCATACTGGCTTAAAACGATTTTTATGTCATGGATGTGATGGACGATTTTCCTGCATTTCAAATCTTCAAGCACATCGACGAACCCATCAAAATACCTGCGGTCAATTACCGCTTGACACAAAATCACAATACTCGTACAATCTAGATGATTGTACTGTTAATATGCTGGACAATGAACATTCAACAACTACAATCTAA
- Protein Sequence
- MVRKSQRQKDANIKNVSNRSDKSDNDENERDDDDGLKCKYCDVFSTTAKDRRKHEDDCELKATANVFTTSDGKLRFLCTVCNQLFKYQTGLKKHELRHQPPGGFICSECNEHFITDAERSIHKEIVHKIFKCLICNEKCSSEEEFLKHINDLHEGRDREYVVCGECGAQFRQKNQLRLHIESKCGTIRCYTCKQCNSKFMTQNTLNAHMLIHTGEKKHLCNYCGNSFLSRGQLKIHERSHTKEKPYKCLICNKAFSHRESAVTHSSIHTGIKPYQCQCCGNQFSCIGNLIKHRRIRPQTCGLPQYTNTKCAPRASTKVPGSLTLKKEYPVKRAYAKRKIVSVPELLSVRAELTNQTESTKIVSSTAQQNEFDEYLILNSIESSENIESNNFEKTELDEMDTEPSADCLNIFEPSVLNAPFTTNENSSNLSYNIAKGSLIVLTTDGNYMITNLSNEIKKPIEIKVNPPQMEQVIILNSNDIQFTDVEIDCQNVQNILNEKSTNTDTNIQILEDSTMKNPISIDGGQDDELLKEEYLDNTIQHLEIVPIDATVINDSVNENVIKTEPEKSKQTVEIHRCELCSMQFKQEKTLLKHLDTKHNIQCDIIKKDLFNCKYCDKQYLHSKLLDRHILCHGPNGNLLHKCSCCPLYFETKFKMQLHAKKEHEDRLKCEYCHKIYNDIDCKAAHIRKFHKKTGAPQKKYTFVCSKCGKKFNSRVSLADHEQGDCGRSPMYKCNYDGCGKSLHSLGSLKIHQLIHTGDLPFSCSFCKKKFRTHGQVKVHERSHSGEKPFKCNQCPKAFAHRESLLTHLSLHTGLKRFLCHGCDGRFSCISNLQAHRRTHQNTCGQLPLDTKSQYSYNLDDCTVNMLDNEHSTTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -