Rmax019315.1
Basic Information
- Insect
- Resseliella maxima
- Gene Symbol
- -
- Assembly
- GCA_029041755.1
- Location
- JAQOWM010000817.1:9439-12420[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.38 36 5.7 0.1 1 12 100 111 100 114 0.90 2 11 8.4 7.9e+02 1.4 0.1 8 20 225 237 224 238 0.89 3 11 0.0015 0.14 13.2 4.0 1 23 271 293 271 293 0.96 4 11 1.8 1.7e+02 3.5 1.5 1 14 324 336 324 345 0.71 5 11 0.00017 0.016 16.2 0.2 1 23 351 373 351 373 0.97 6 11 0.0013 0.13 13.4 1.7 1 23 394 416 394 416 0.97 7 11 7.4e-07 7e-05 23.6 4.7 1 23 422 444 422 444 0.99 8 11 4.5e-05 0.0043 18.0 2.0 1 23 450 472 450 472 0.98 9 11 1.1e-06 0.00011 23.0 1.3 1 23 478 500 478 500 0.98 10 11 8.2e-05 0.0078 17.2 0.2 1 23 504 526 504 526 0.98 11 11 0.00015 0.014 16.3 0.4 1 23 535 558 535 558 0.95
Sequence Information
- Coding Sequence
- ATGTCAGtgTTAACGAAGAGGCTGGTGAAAATTGTGGCCAGGCCAGATTATAATGAAGCGGAACAAACTTCATCTGATCATCATGAATTTATTACATCAGCTGATGAATTGAACGACGAAGATGGTACGATTGGTTactttgaaaattatgaaatgcatgaaaatgaaagagatgaTGAGGAAGCATATTTTGTGGAATATGTAACCGAAGATGATGAACATTTAATTACTGATGAACAAAATGAGACGGAATTTGATGTTGAACAATTTACGGAATATGTAGAAGACGATGAATTGTACAACTGTAATTTATGtggaatgaatttcaaatctATCACTGAACAcgttgaaaaatatcattctGGGCAAGAGGTGTTGATTGATATCTTGGAAAAAAGCGGATCGGCCATTAAAACTGAATCTGTGGACCCGTTGGATGAGGGAGACAATGAAGATGctgaagatgatgaagaaaatagCATGATCACTAGCTCCGATTACGATGGCGAACTAATTGTGTATGGAAATAAATCTCATAAAAATGATCACAATATCATTGATGACCTAAATAATGGGAATGACCAACAGGTAGTGTACACATATGATGGAGCAACTGGGTCTATTACAAGAGCTAAATGCAATCAAgtgacaaaatcaaataaTTTAAACAGAACGGTCTTCACGACGCAGAAAGCGTTGAATATGCATAAAACACCAAACAGATTGCAAAAACGGGCAGTCAAACCAGCAAGCAAGACGAGCGGAAAACCTCAGCAAGATACACAATTTAACGATACtgcaaaatcaaatcatatctgtttgcattgtaacacGACGTTTCAATCAGCAAAGAGTCTTAAattACATGCTCGAATGCATTTGCCAGTGAAATcgaaaacaattgatgaaGCAACTGAACAAGAAAGTGACAATGCTCTAATGGGAGAACAAGACCAACAGcgtgaaaagtttttttgtgCGATTTGTGGCAAACACTATGATAAAACGTTTGAACAAGTTCATGTACAAATGCACAACGgcgaagaaaaattcaattgccaAATTTGCAACAAAGTATTTGCAAATGAAGAAAGCATTAACATGCATTTGAAAGCTCACAAAGATAATAAGCAACgtgatATCAAAACGAAAGCCGAATTGAACAATGTCAAACTACCATATGCGTGTCAATTTTGTAAGAAGGAATTTGCTCGGCCAcatgaaaaagtaaaacatgAACGAGTTCATACAGGTGAAAAACCATACGAATGTGAATTGTGTGGAAAGTGCTTCAGAGTCTCATACTGTTTAACAATTCATATGCGAACTCATACAGATGCTCGACCTTACGTGTGTCCTATGTGTAATAAAAGaTTCAAAGCACAGTCAGTTTATAATCATCATTTGTTGACACATTCAGATGAGCGCAACTATAAATGTCCGTATTGtccaaaaacattcaaaacatcGGTGCAATTGTCTGGTCACAAGAATAGTCACACAAAACCATTCACATGTACAGAATGTAATCGACCATTTGGATCATTGTATGCAGTTCGTGCGCACATGGAAAGTCACAAACGACCAAACCATAATTTGAAGCATATTTGTGATATTTGCGGCGCGAAATATGCTCGCCGATTTGCGCTTAACGATCACATGAAAGAACAACACAAAGATGTACAATTGGTACAAATTGTTGAATCAAGCAGTGGGAGAAAGCAACAAGCGAAGAGAGCAAAAAGGGTGAAACAAATCGATATACTGGAAGAGGACGGGACTCAAGAGTTGGAAACAGGCGGAGAACTAATATTACCAAATATGGTCGAACAGGAgATAACAATAAGCGAAATCGAACATTTCGATAACGAAGAAGAAGTAGTTGAAATGGACGAATGGcttaaataa
- Protein Sequence
- MSVLTKRLVKIVARPDYNEAEQTSSDHHEFITSADELNDEDGTIGYFENYEMHENERDDEEAYFVEYVTEDDEHLITDEQNETEFDVEQFTEYVEDDELYNCNLCGMNFKSITEHVEKYHSGQEVLIDILEKSGSAIKTESVDPLDEGDNEDAEDDEENSMITSSDYDGELIVYGNKSHKNDHNIIDDLNNGNDQQVVYTYDGATGSITRAKCNQVTKSNNLNRTVFTTQKALNMHKTPNRLQKRAVKPASKTSGKPQQDTQFNDTAKSNHICLHCNTTFQSAKSLKLHARMHLPVKSKTIDEATEQESDNALMGEQDQQREKFFCAICGKHYDKTFEQVHVQMHNGEEKFNCQICNKVFANEESINMHLKAHKDNKQRDIKTKAELNNVKLPYACQFCKKEFARPHEKVKHERVHTGEKPYECELCGKCFRVSYCLTIHMRTHTDARPYVCPMCNKRFKAQSVYNHHLLTHSDERNYKCPYCPKTFKTSVQLSGHKNSHTKPFTCTECNRPFGSLYAVRAHMESHKRPNHNLKHICDICGAKYARRFALNDHMKEQHKDVQLVQIVESSSGRKQQAKRAKRVKQIDILEEDGTQELETGGELILPNMVEQEITISEIEHFDNEEEVVEMDEWLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288459;
- 90% Identity
- -
- 80% Identity
- -