Rmax009851.1
Basic Information
- Insect
- Resseliella maxima
- Gene Symbol
- -
- Assembly
- GCA_029041755.1
- Location
- JAQOWM010000438.1:3843161-3846234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.019 1.8 9.8 0.2 2 23 198 220 197 220 0.91 2 13 5.4e-05 0.0051 17.7 2.7 1 23 253 275 253 275 0.99 3 13 3.5e-05 0.0033 18.4 0.5 2 23 290 311 289 311 0.96 4 13 0.0032 0.3 12.2 1.2 2 23 333 355 332 355 0.95 5 13 3.2 3e+02 2.7 0.2 6 23 365 382 365 382 0.93 6 13 0.0086 0.81 10.8 5.3 1 23 388 411 388 411 0.93 7 13 6.8e-06 0.00064 20.6 1.6 1 23 419 442 419 442 0.93 8 13 2.3e-05 0.0022 18.9 0.8 1 23 449 472 449 472 0.92 9 13 8.2e-06 0.00078 20.3 2.4 2 23 480 501 479 501 0.97 10 13 5.4 5.1e+02 2.0 0.2 2 23 513 534 512 534 0.69 11 13 0.012 1.1 10.4 0.2 2 23 540 562 539 562 0.96 12 13 7.2e-06 0.00068 20.5 2.0 1 23 567 589 567 589 0.97 13 13 0.00013 0.012 16.5 2.8 1 23 595 618 595 618 0.98
Sequence Information
- Coding Sequence
- ATGGGGGAGAGCAATGCTTGCCGTTTATGTTTGTCAACAAACagtgaaaattatattgaaatttttagtGATATtggaatagaaatgaaaataagcgATATAATtagtttgcattttaattgtgtggtaaatatatttgattcattGCCAAATGTTGTGTGTCAATTATGTTGGAGAATAACTCAAGATTTCCATGAATtatatcaaaaatcaaaaattgtgcaagaaaaattattaaatgcaTACATTAAAATAGAACCAGATAATCAAGATGATCATAATAATGTAAACAATGGTGAAATTCATTACATTGATGATACAAATTATGACGCGGCATTGATTAAAGAAGAACCGAATTTATTagaTGATTCAGATTCCGATCGAAATGACAGCGACCACAGCGACCAAATTGATTATGGTGAAGAGTCTAATGATTCCGATGAAATGACTATTGAAAATACTGTTAAAAATGTTCCAGAATATAACTGTGATAAGGAACatttaaatgaaaagaaaagtcgacgaaaaagaaaattaaaagcaaaacaatttgaaaatttatttgcgGAAAATAAGCAACGATTCGATATGACATGTGATTtatgtacaaaaatatttgaatcattgGATGAAGCAAGAAAACATTATGCAGAACAACACAATAATGCAAAAGGatatataaaatgttgtagctcgaaattattttatccATGTTTAATTGTACAACACTTACAACGACATTTGAATCCCGATAAATTTAAGTGCACTGAATGTAATAAATTTCTGAGCAATGAATTTTGGTTAAAAATGCATATGAAAAAGCACAAAGAAggaaacatttcaaaagtatttaaagaaaaatcaattccatGTAAAATTTGTAGCAAATTATTTGcaagtaaattttcattggaaaatcatatgaaattgcacaaaaaGAGAGATGAACATGAAGATGGTCAATATGTtaaatttatgattgaaaattttgatatgaaatgtGATCATTGTGATACAATATTCACTGGATTGTATGATGCACGTCGTCACTATAAGGAATTGCATAACGAAGATAAAGGTTATCTTAAATGTTGCAAAACCAAACTAAGGAGTCCAGTATTTATCAGAGATCATATTCGTACTCATATTGATCCAGAATGTTTCAaatGTGATATATGTgataaaagcaatttttcaacgaaaatgaatttaaccaaacataaacataaacacaaaatactTATGGAAAGAAGATATAGTTGTGATTATTGTGGCAAATTATTTCGTAATAAAAATACACTCGCAAAACATATGTTTGCAAAACATGTTAATGCAGTGCCAGAACATGAGTGTGAGATATGTAATAAAAAgTTCAAATTACCGTCATTACTTAAAAGTCACATTTATGGTGTTCATCGAGAAAAAAAGCGTAATAAAACGTGTGAAATATGTGGAAAAagtttttatgtaaaatttcaTCTTGATAAACATATGTTATCACATATTGATAAATCAGAGCGTATAACGCAAggtaaaaaatgtgaatattgtggTGAATGGTTGATGACCAAAAGTGGAATTTATTATCATGAACAAATTCATACGAGTGGCATTCAAAAATGTCCACATTGTGAAATGGAATTGGCAAATAAAGTGGCATTGCTTGGACACATTCGTCAATATCACAGAgaacataaatttaaatgtagctattgtgaaaaaacattttcgaatgCTTCAACAATGAAGACACACGAAGAAAGTCATACGCgacataaaaattatcaatgtAGATTTTGCCCCAAAGTTTTTTCCGTTCAAAGTTCAAGGCGAACGCACACAAGAAGAAATCATTTAGAAGAATTGAAACAAAGTAAAgtgataaaatttaaataa
- Protein Sequence
- MGESNACRLCLSTNSENYIEIFSDIGIEMKISDIISLHFNCVVNIFDSLPNVVCQLCWRITQDFHELYQKSKIVQEKLLNAYIKIEPDNQDDHNNVNNGEIHYIDDTNYDAALIKEEPNLLDDSDSDRNDSDHSDQIDYGEESNDSDEMTIENTVKNVPEYNCDKEHLNEKKSRRKRKLKAKQFENLFAENKQRFDMTCDLCTKIFESLDEARKHYAEQHNNAKGYIKCCSSKLFYPCLIVQHLQRHLNPDKFKCTECNKFLSNEFWLKMHMKKHKEGNISKVFKEKSIPCKICSKLFASKFSLENHMKLHKKRDEHEDGQYVKFMIENFDMKCDHCDTIFTGLYDARRHYKELHNEDKGYLKCCKTKLRSPVFIRDHIRTHIDPECFKCDICDKSNFSTKMNLTKHKHKHKILMERRYSCDYCGKLFRNKNTLAKHMFAKHVNAVPEHECEICNKKFKLPSLLKSHIYGVHREKKRNKTCEICGKSFYVKFHLDKHMLSHIDKSERITQGKKCEYCGEWLMTKSGIYYHEQIHTSGIQKCPHCEMELANKVALLGHIRQYHREHKFKCSYCEKTFSNASTMKTHEESHTRHKNYQCRFCPKVFSVQSSRRTHTRRNHLEELKQSKVIKFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -