Rmax009332.1
Basic Information
- Insect
- Resseliella maxima
- Gene Symbol
- -
- Assembly
- GCA_029041755.1
- Location
- JAQOWM010000414.1:271997-276698[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0011 0.11 13.6 0.2 1 23 52 75 52 75 0.98 2 18 0.0041 0.39 11.8 0.9 1 23 84 107 84 107 0.97 3 18 4.5 4.2e+02 2.3 0.3 2 20 112 129 111 131 0.79 4 18 0.0017 0.16 13.0 0.6 3 23 138 158 138 158 0.98 5 18 0.061 5.8 8.1 0.6 2 20 301 319 300 320 0.94 6 18 4 3.8e+02 2.4 2.2 1 23 338 360 338 360 0.92 7 18 0.0013 0.12 13.4 0.1 1 20 379 398 379 400 0.96 8 18 3 2.8e+02 2.8 2.1 2 23 415 438 414 438 0.83 9 18 0.076 7.1 7.9 1.9 2 21 443 461 443 462 0.94 10 18 6.2e-05 0.0059 17.6 0.6 2 23 468 490 467 490 0.92 11 18 8.5 8.1e+02 1.4 0.3 3 10 499 506 497 511 0.90 12 18 0.00065 0.061 14.4 0.7 1 23 526 548 526 548 0.97 13 18 0.00014 0.013 16.5 2.6 1 23 566 588 566 588 0.96 14 18 5.5e-05 0.0052 17.7 0.3 2 23 594 615 593 615 0.96 15 18 0.0053 0.5 11.5 0.7 1 23 620 642 620 642 0.99 16 18 0.00024 0.022 15.7 1.7 3 23 653 673 651 673 0.97 17 18 2.8e-06 0.00027 21.8 1.6 1 23 679 701 679 701 0.99 18 18 0.00011 0.01 16.8 0.9 1 23 707 729 707 729 0.96
Sequence Information
- Coding Sequence
- ATGTTGGTGGATGATGAACCGAGTTCAGAACATATTTCGGTTTTACCTGAATTGGCAGATGCAAATACATCAGAAAAGTCTGAAGAACTTGTAATACCAACTGTATATGTCAAAATCGGTCCAACTTATCCAGTGgaggaaaaatcaaaatTATTCAAGTGTGGATTATGTGGAATGGCTTTTGAAAAGGGTCCCGAGTTACATAACCATTTACGTATCGAGCATacatcaaatgataaaaatgagaCATATCAATGCTATTtgtgtaaattgaaattacgtTCATTGGGAACCCTACAAGAACACATGAAAGAGCAACATGCAAGAGATACGAAATGTAATATTTGCCAAATTCCATTAACATCCAATGAAATGAAGATTCATTTGTGTGGTGACCGCAATCGAATTGGCTGTGAATATTGCCGGAGAAGTTTTACGACAATCGTCAAATTAATGGAACATTTGGAATCGCACAAAAGGAAGAAATTACATCGATGTAATGATCTGATTACCGCTAAGACGGAAAATGATTCATCAATGACCAAAAATAGACCGAATATTTTAAAACGAGCTAGTGGACAAATTAGATACGATGCAAAAGTTATaaaaattgaaccaaattTGAATGATACTGGCATGGAAAAGAAGATCAATATTTGTACCAATTGCCTGAAGCTAGATTTAAAATTGCAAGAAGCAAATAAGCATATCAAAATGCTACAAGACAAAGTTAATTCGCTCAAAGCAGATTTAAAACAATCCAAAGGTGACGTTTCAATCAAAAAGTACAGCAGAGGTGttcaaactgaattgaaaaagttAACAAAATGTACACTTTGTCGGGCATGGTTGTCAAAGGAagatatttatattcatatgtGCATTAACCAAGAATTTATCCGTTGCAAATATTGCTCGAGTACATTCAAGTCGACACAGAAGCTTCTTGATCATTTGGAATGCGAAGatcataaacaaaaaagacaacaagacgttgaaaataaaagatttttcaaatgtgatgAATGTTCGCTCGGTTATCCCATGTTGTTTCTATTGAATTGTCACAAAAAATCACACAAGAAAGACACAAATGAATCTCtggaaaaaacaacatcacaaACTATTTCAATTTACAAATGTGGCAGATGCGATATTGCATTTGACAGTACCGCTGAGCTTGTAAAACATATGCATGCATCAAAACAACGTTGCGATTTATTTTCAGGTCGTTCAACATTGGAATGCTTTTTatgtaaaatgcaattttgcgTGAATTGGGAGGAACTATGCCAACACATGACCGAAGCACATTCAAGAGATGAACAGTGTgaaatttgtttcgaattcTTTACAAAACGTGAACTCAATAAGCATTTATGTGGCAACGAGAAAAGTGTTCAATGTGAATATTGTAATAAGATTTTTCGAACAACTCagaaattgatgaaacatATCGAAgatttgcataaaataaacatgaaattatATGGATGCAATGAATGTCGTAAATTTTTCCCAATGATGAAACTCAAGCAATTTCATTCGATGCATCATTCAACTGTAGAAAAACCATTCATGTGTTATATGTGCTCGAAAACATTTGTCAACGAAATTCAACTGTTAAGCCATGAAAGCACTCacaacaaagaagaaaagaaaaaggatcAAAGCACAAATGTGACAAATAGAAAATATCTTTGTGCCGaatgtggaaaatatttcacatcTGCCACATGTTTGacacaacacaaacaaactCACACCGAACCAACCATTCAATGCCCAGATTGTCCAAGAAAGTTCCGTAATATCTATAAACTTGAAATCCATAGGGATAGCCATCGCAAACTTTTATATGTGTGTGACATTTGCCAATCTGAACTTCAATCGAAGCGTGGCTATGAAAAACATATGAGAAGACACAATCGAACTGAGTCCGACCGAAAATTTGGATGTAAAATCTGTTCTCGGAAATTTTTCGATGCAAAACATTTAGCAAAACACCAAATTGTACATACTGAAGGAAGACcattcaaatgtaaatattgtgacGTAGCGTACAAATACCGTGGTGATCTGAACAAACATCTTCGCAGTCATATGGATGGAAAAATTCATGAATGTGATAAGTGTCCGATGCGATTTTATTATCCTGATGAATTAACTCAACATTTGAATGATCAttggaaagaagaaaatgccAAACTTCAAAAGATGGATATGCGGTGA
- Protein Sequence
- MLVDDEPSSEHISVLPELADANTSEKSEELVIPTVYVKIGPTYPVEEKSKLFKCGLCGMAFEKGPELHNHLRIEHTSNDKNETYQCYLCKLKLRSLGTLQEHMKEQHARDTKCNICQIPLTSNEMKIHLCGDRNRIGCEYCRRSFTTIVKLMEHLESHKRKKLHRCNDLITAKTENDSSMTKNRPNILKRASGQIRYDAKVIKIEPNLNDTGMEKKINICTNCLKLDLKLQEANKHIKMLQDKVNSLKADLKQSKGDVSIKKYSRGVQTELKKLTKCTLCRAWLSKEDIYIHMCINQEFIRCKYCSSTFKSTQKLLDHLECEDHKQKRQQDVENKRFFKCDECSLGYPMLFLLNCHKKSHKKDTNESLEKTTSQTISIYKCGRCDIAFDSTAELVKHMHASKQRCDLFSGRSTLECFLCKMQFCVNWEELCQHMTEAHSRDEQCEICFEFFTKRELNKHLCGNEKSVQCEYCNKIFRTTQKLMKHIEDLHKINMKLYGCNECRKFFPMMKLKQFHSMHHSTVEKPFMCYMCSKTFVNEIQLLSHESTHNKEEKKKDQSTNVTNRKYLCAECGKYFTSATCLTQHKQTHTEPTIQCPDCPRKFRNIYKLEIHRDSHRKLLYVCDICQSELQSKRGYEKHMRRHNRTESDRKFGCKICSRKFFDAKHLAKHQIVHTEGRPFKCKYCDVAYKYRGDLNKHLRSHMDGKIHECDKCPMRFYYPDELTQHLNDHWKEENAKLQKMDMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -