Rmax012035.1
Basic Information
- Insect
- Resseliella maxima
- Gene Symbol
- -
- Assembly
- GCA_029041755.1
- Location
- JAQOWM010000547.1:43407-45452[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.5e-06 0.00023 22.0 1.9 2 23 39 60 39 60 0.97 2 11 3.7e-08 3.5e-06 27.7 0.6 1 23 66 88 66 88 0.99 3 11 2e-07 1.9e-05 25.4 0.3 1 23 94 116 94 116 0.98 4 11 1.4e-05 0.0013 19.6 0.5 4 23 127 146 122 147 0.92 5 11 1.7e-05 0.0016 19.3 0.6 1 23 152 174 152 174 0.97 6 11 7.8e-05 0.0073 17.3 1.9 2 23 181 203 180 203 0.96 7 11 0.0024 0.23 12.6 1.2 1 23 209 231 209 231 0.96 8 11 2.1e-05 0.002 19.0 1.9 1 23 236 258 236 258 0.98 9 11 6.3e-06 0.0006 20.7 1.4 1 23 264 287 264 287 0.96 10 11 0.0044 0.42 11.7 0.5 1 23 308 333 308 333 0.92 11 11 0.0014 0.13 13.3 1.6 2 23 471 493 470 493 0.94
Sequence Information
- Coding Sequence
- ATGCAGGCAGTTGTTGGTGATGCGAGGAAAGGTGACGCAGCGCTTGCGTACGAACTGgaaaaatcattgcaaaatgtTGAGcAGCAAGAGCAATTGATGTACGGTGAAGAGGGCACATGCACGTTATGCTCAAAGACATTTGCTAGAAAATCATCGTTATTGACTCATATTCGAAATCACACAGCTGAACGAAAATACCAATGTCCAACTTGTCAAAAAACATTCACACAAGCGGCTAATCTACGAAATCATGAACGAATCCATTCACAGGTTCGTCCGTATGTGTGTGGTGATTGTGGAAAAGCATTCACGcaaattacaaatttgaataATCATCGAAGATTGCATACTGGTGAAAGACCATTTGTTTGTATCGAACCGGAATGTGGACGATCATTTGCACAAgttacaaatttaaataatcacATGAAATCTCATCATAAAATCCAGCAATATGTTTGCAATCAATGTCCGCGTCGTTTTACACAAGTAACATcattaaatcaacatttattaCTTCATAGCGGTTTCAGTGGTTTAGTATGCCCACAATGCCCTGATAAAACgtttaaacaacaaaatcaattgcatcaaCACATGAAAAGTCATGGTTTAAGTTTCCCATTTGAGTGCACAAAATGCGATGAGAAATTTTTACAAGCCGCTCATTTTAATCAACATTTAGCATTGcatgatgaatttaaatttcgatGTACAATGTGCTCGAGTAGTTTTAATCAAGAAGCATTGTTAAAAAAACATATGCAACGGCACATTGATGGTCGTTATCATCAATGTCCTGAATGTTCAAAAggatttacattgaaaaatcaactaaataaGCATATACAACTTGAGCATGCAAGCAGCGAAGCGGCAcgtttattaaataaaaagcgAACATCAACTATTGCCGGCAAATATAATTGCTATTTTGATAATTGTGATGCATTCTTTGATACAAACGATTTGCTGAatacacatttaaataatgtaCATGGATTGGCATTGATTAAAAGTCAAAATGCTGGTAATACCAATACCAATAGCGGTGGTAGTGGTGGCGGCGGCGGCGGTGGTGGCcgaagtaaaaaagaaaaagcgcATTCACAAGCGCAAAGCATGTTTAGTGAGCAGCTAAAAATTAAGGaagaaaatcatcatcatcttcaacATCAACAGGTACCATTAACGTTGCCACTTGGCATTTCGTTACCATTACCGCCATTTATGAATGGCAATGGTTCATTACAGGCACAAAATCAACATATGccacaacaaatgaatgtcATGCTACAGCatattcaacaacaacatcaacaacagcagcaacaacagcaacagcaacaacaacatcatccgCAAAATCATGCCCATGCCCATGCCATAAACATATCGAAAGAGAAGAACAAGTGCCACGAGTGTAATATTATCTATTCAAATGAGACCGATTACAAGGTTCATATGTATTAcaaacatttcacaaatgccaataaaatgtaa
- Protein Sequence
- MQAVVGDARKGDAALAYELEKSLQNVEQQEQLMYGEEGTCTLCSKTFARKSSLLTHIRNHTAERKYQCPTCQKTFTQAANLRNHERIHSQVRPYVCGDCGKAFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKSHHKIQQYVCNQCPRRFTQVTSLNQHLLLHSGFSGLVCPQCPDKTFKQQNQLHQHMKSHGLSFPFECTKCDEKFLQAAHFNQHLALHDEFKFRCTMCSSSFNQEALLKKHMQRHIDGRYHQCPECSKGFTLKNQLNKHIQLEHASSEAARLLNKKRTSTIAGKYNCYFDNCDAFFDTNDLLNTHLNNVHGLALIKSQNAGNTNTNSGGSGGGGGGGGRSKKEKAHSQAQSMFSEQLKIKEENHHHLQHQQVPLTLPLGISLPLPPFMNGNGSLQAQNQHMPQQMNVMLQHIQQQHQQQQQQQQQQQQHHPQNHAHAHAINISKEKNKCHECNIIYSNETDYKVHMYYKHFTNANKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133594; iTF_01350982; iTF_00367455;
- 90% Identity
- iTF_01350982;
- 80% Identity
- -